Analysis of interatomic Contacts of Structural Units in PDB entry:
5OMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OMO entry

There are 2 chains in PDB entry 5OMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO -4SER 720
B
 HIS 0ARG 587
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 5OMO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 42Right-handed alpha
Helix 2
AA2
A
62 66Right-handed 310
Helix 3
AA3
A
73 85Right-handed alpha
Helix 4
AA4
A
99 108Right-handed alpha
Helix 5
AA5
A
122 127Right-handed 310
Helix 6
AA6
A
133 143Right-handed alpha
Helix 7
AA7
A
143 154Right-handed alpha
Helix 8
AA8
A
159 165Right-handed alpha
Helix 9
AA9
A
175 186Right-handed alpha
Helix 10
AB1
A
192 200Right-handed 310
Helix 11
AB2
A
207 223Right-handed alpha
Helix 12
AB3
A
226 242Right-handed alpha
Helix 13
AB4
A
243 260Right-handed alpha
Helix 14
AB5
A
261 276Right-handed alpha
Helix 15
AB6
A
277 279Right-handed 310
Helix 16
AB7
A
305 317Right-handed alpha
Helix 17
AB8
A
328 350Right-handed alpha
Helix 18
AB9
A
367 372Right-handed 310
Helix 19
AC1
A
384 399Right-handed alpha
Helix 20
AC2
A
413 420Right-handed alpha
Helix 21
AC3
A
423 425Right-handed 310
Helix 22
AC4
A
451 465Right-handed alpha
Helix 23
AC5
A
479 498Right-handed alpha
Helix 24
AC6
A
500 512Right-handed alpha
Helix 25
AC7
A
516 525Right-handed alpha
Helix 26
AC8
A
526 536Right-handed alpha
Helix 27
AC9
A
559 567Right-handed alpha
Helix 28
AD1
A
571 575Right-handed 310
Helix 29
AD2
A
592 607Right-handed alpha
Helix 30
AD3
A
614 636Right-handed alpha
Helix 31
AD4
A
641 653Right-handed alpha
Helix 32
AD5
A
656 660Right-handed 310
Helix 33
AD6
A
661 670Right-handed alpha
Helix 34
AD7
A
670 685Right-handed alpha
Helix 35
AD8
A
688 692Right-handed 310
Helix 36
AD9
A
694 703Right-handed alpha
Helix 37
AE1
A
707 709Right-handed 310
Helix 38
AE2
A
710 716Right-handed alpha
Helix 39
AE3
B
25 42Right-handed alpha
Helix 40
AE4
B
62 66Right-handed 310
Helix 41
AE5
B
74 85Right-handed alpha
Helix 42
AE6
B
99 108Right-handed alpha
Helix 43
AE7
B
122 127Right-handed 310
Helix 44
AE8
B
133 143Right-handed alpha
Helix 45
AE9
B
143 154Right-handed alpha
Helix 46
AF1
B
159 165Right-handed alpha
Helix 47
AF2
B
175 188Right-handed alpha
Helix 48
AF3
B
192 200Right-handed 310
Helix 49
AF4
B
207 223Right-handed alpha
Helix 50
AF5
B
226 242Right-handed alpha
Helix 51
AF6
B
243 260Right-handed alpha
Helix 52
AF7
B
261 276Right-handed alpha
Helix 53
AF8
B
305 317Right-handed alpha
Helix 54
AF9
B
328 350Right-handed alpha
Helix 55
AG1
B
367 372Right-handed 310
Helix 56
AG2
B
384 399Right-handed alpha
Helix 57
AG3
B
413 420Right-handed alpha
Helix 58
AG4
B
423 425Right-handed 310
Helix 59
AG5
B
451 465Right-handed alpha
Helix 60
AG6
B
479 498Right-handed alpha
Helix 61
AG7
B
500 512Right-handed alpha
Helix 62
AG8
B
516 525Right-handed alpha
Helix 63
AG9
B
526 536Right-handed alpha
Helix 64
AH1
B
559 567Right-handed alpha
Helix 65
AH2
B
571 575Right-handed 310
Helix 66
AH3
B
592 607Right-handed alpha
Helix 67
AH4
B
614 636Right-handed alpha
Helix 68
AH5
B
641 653Right-handed alpha
Helix 69
AH6
B
656 660Right-handed 310
Helix 70
AH7
B
661 670Right-handed alpha
Helix 71
AH8
B
670 685Right-handed alpha
Helix 72
AH9
B
688 692Right-handed 310
Helix 73
AI1
B
694 703Right-handed alpha
Helix 74
AI2
B
707 709Right-handed 310
Helix 75
AI3
B
710 716Right-handed alpha
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There are 10 sheets in PDB entry 5OMO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
11 16anti-parallel
Strand 3
A
47 52parallel
Strand 4
A
89 93parallel
Strand 5
A
110 114parallel
Strand 6
A
170 172parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 98first strand
Strand 2
A
118 120parallel
Strand 3
A
156 158anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 365first strand
Strand 2
A
321 325parallel
Strand 3
A
298 302parallel
Strand 4
A
376 379parallel
Strand 5
A
404 407parallel
Strand 6
A
427 431parallel
Strand 7
A
441 446anti-parallel
Strand 8
A
468 471parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
551 552first strand
Strand 2
A
555 556anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
580 581first strand
Strand 2
A
589 590anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 6first strand
Strand 2
B
11 16anti-parallel
Strand 3
B
47 52parallel
Strand 4
B
89 93parallel
Strand 5
B
110 114parallel
Strand 6
B
170 172parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 98first strand
Strand 2
B
118 120parallel
Strand 3
B
156 158anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
362 365first strand
Strand 2
B
321 325parallel
Strand 3
B
298 302parallel
Strand 4
B
376 379parallel
Strand 5
B
404 407parallel
Strand 6
B
427 432parallel
Strand 7
B
441 446anti-parallel
Strand 8
B
468 471parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
551 552first strand
Strand 2
B
555 556anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
580 581first strand
Strand 2
B
589 590anti-parallel
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