Analysis of interatomic Contacts of Structural Units in PDB entry:
5OMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OMP entry

There is 1 chain in PDB entry 5OMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 13GLU 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 5OMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 21Right-handed alpha
Helix 2
AA2
A
87 94Right-handed alpha
Helix 3
AA3
A
95 97Right-handed 310
Helix 4
AA4
A
109 112Right-handed 310
Helix 5
AA5
A
192 197Right-handed 310
Helix 6
AA6
A
199 207Right-handed alpha
Helix 7
AA7
A
230 234Right-handed 310
Helix 8
AA8
A
255 259Right-handed 310
Helix 9
AA9
A
260 281Right-handed alpha
Helix 10
AB1
A
283 299Right-handed alpha
Helix 11
AB2
A
305 330Right-handed alpha
Helix 12
AB3
A
332 347Right-handed alpha
Helix 13
AB4
A
350 364Right-handed alpha
Helix 14
AB5
A
366 381Right-handed alpha
Helix 15
AB6
A
384 424Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 5OMP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
33 39anti-parallel
Strand 3
A
102 107anti-parallel
Strand 4
A
128 138anti-parallel
Strand 5
A
52 60anti-parallel
Strand 6
A
66 70anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
33 39anti-parallel
Strand 3
A
102 107anti-parallel
Strand 4
A
128 138anti-parallel
Strand 5
A
52 60anti-parallel
Strand 6
A
77 80anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 141first strand
Strand 2
A
148 154anti-parallel
Strand 3
A
214 219anti-parallel
Strand 4
A
241 251anti-parallel
Strand 5
A
167 176anti-parallel
Strand 6
A
179 189anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il