Analysis of interatomic Contacts of Structural Units in PDB entry:
5OMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OMS entry

There is 1 chain in PDB entry 5OMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5VAL 407
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5OMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 15Right-handed 310
Helix 2
AA2
A
16 23Right-handed alpha
Helix 3
AA3
A
24 35Right-handed alpha
Helix 4
AA4
A
50 60Right-handed alpha
Helix 5
AA5
A
68 76Right-handed alpha
Helix 6
AA6
A
79 83Right-handed 310
Helix 7
AA7
A
84 100Right-handed alpha
Helix 8
AA8
A
100 122Right-handed alpha
Helix 9
AA9
A
131 135Right-handed alpha
Helix 10
AB1
A
135 149Right-handed alpha
Helix 11
AB2
A
154 170Right-handed alpha
Helix 12
AB3
A
182 185Right-handed 310
Helix 13
AB4
A
186 210Right-handed alpha
Helix 14
AB5
A
214 222Right-handed alpha
Helix 15
AB6
A
231 264Right-handed alpha
Helix 16
AB7
A
264 274Right-handed alpha
Helix 17
AB8
A
277 289Right-handed alpha
Helix 18
AB9
A
320 325Right-handed alpha
Helix 19
AC1
A
351 355Right-handed 310
Helix 20
AC2
A
358 377Right-handed alpha
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There are 4 sheets in PDB entry 5OMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
45 48anti-parallel
Strand 3
A
316 319parallel
Strand 4
A
296 300anti-parallel
Strand 5
A
63 66anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
402 404anti-parallel
Strand 3
A
381 382anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 306first strand
Strand 2
A
309 311anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 391first strand
Strand 2
A
397 398anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il