Analysis of interatomic Contacts of Structural Units in PDB entry:
5OMW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OMW entry

There are 4 chains in PDB entry 5OMW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 860
B	G 1	A 76
D	MET 1	GLY 860
E	G 1	A 76

There are 76 helices in PDB entry 5OMW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	9	Right-handed 310
Helix 2	AA2	A	10	22	Right-handed alpha
Helix 3	AA3	A	49	69	Right-handed alpha
Helix 4	AA4	A	84	93	Right-handed alpha
Helix 5	AA5	A	96	115	Right-handed alpha
Helix 6	AA6	A	120	124	Right-handed 310
Helix 7	AA7	A	129	146	Right-handed alpha
Helix 8	AA8	A	167	171	Right-handed 310
Helix 9	AA9	A	195	197	Right-handed 310
Helix 10	AB1	A	198	205	Right-handed alpha
Helix 11	AB2	A	206	209	Right-handed 310
Helix 12	AB3	A	213	225	Right-handed alpha
Helix 13	AB4	A	249	256	Right-handed 310
Helix 14	AB5	A	265	272	Right-handed alpha
Helix 15	AB6	A	275	286	Right-handed alpha
Helix 16	AB7	A	291	298	Right-handed alpha
Helix 17	AB8	A	342	353	Right-handed alpha
Helix 18	AB9	A	384	388	Right-handed 310
Helix 19	AC1	A	391	406	Right-handed alpha
Helix 20	AC2	A	446	450	Right-handed 310
Helix 21	AC3	A	465	470	Right-handed alpha
Helix 22	AC4	A	492	497	Right-handed 310
Helix 23	AC5	A	498	503	Right-handed alpha
Helix 24	AC6	A	514	522	Right-handed alpha
Helix 25	AC7	A	532	534	Right-handed 310
Helix 26	AC8	A	535	551	Right-handed alpha
Helix 27	AC9	A	587	589	Right-handed 310
Helix 28	AD1	A	630	638	Right-handed alpha
Helix 29	AD2	A	638	650	Right-handed alpha
Helix 30	AD3	A	662	683	Right-handed alpha
Helix 31	AD4	A	695	718	Right-handed alpha
Helix 32	AD5	A	721	738	Right-handed alpha
Helix 33	AD6	A	743	762	Right-handed alpha
Helix 34	AD7	A	765	776	Right-handed alpha
Helix 35	AD8	A	781	785	Right-handed 310
Helix 36	AD9	A	791	796	Right-handed 310
Helix 37	AE1	A	821	831	Right-handed alpha
Helix 38	AE2	A	832	838	Right-handed alpha
Helix 39	AE3	D	6	22	Right-handed alpha
Helix 40	AE4	D	49	69	Right-handed alpha
Helix 41	AE5	D	84	93	Right-handed alpha
Helix 42	AE6	D	96	115	Right-handed alpha
Helix 43	AE7	D	120	124	Right-handed 310
Helix 44	AE8	D	129	146	Right-handed alpha
Helix 45	AE9	D	167	169	Right-handed 310
Helix 46	AF1	D	195	197	Right-handed 310
Helix 47	AF2	D	198	205	Right-handed alpha
Helix 48	AF3	D	206	208	Right-handed 310
Helix 49	AF4	D	213	225	Right-handed alpha
Helix 50	AF5	D	250	256	Right-handed 310
Helix 51	AF6	D	265	272	Right-handed alpha
Helix 52	AF7	D	275	285	Right-handed alpha
Helix 53	AF8	D	286	288	Right-handed 310
Helix 54	AF9	D	291	298	Right-handed alpha
Helix 55	AG1	D	338	341	Right-handed 310
Helix 56	AG2	D	342	352	Right-handed alpha
Helix 57	AG3	D	384	388	Right-handed 310
Helix 58	AG4	D	391	406	Right-handed alpha
Helix 59	AG5	D	446	450	Right-handed 310
Helix 60	AG6	D	465	470	Right-handed alpha
Helix 61	AG7	D	492	497	Right-handed alpha
Helix 62	AG8	D	498	503	Right-handed alpha
Helix 63	AG9	D	514	522	Right-handed alpha
Helix 64	AH1	D	532	534	Right-handed 310
Helix 65	AH2	D	535	551	Right-handed alpha
Helix 66	AH3	D	630	638	Right-handed alpha
Helix 67	AH4	D	638	649	Right-handed alpha
Helix 68	AH5	D	662	682	Right-handed alpha
Helix 69	AH6	D	695	718	Right-handed alpha
Helix 70	AH7	D	721	738	Right-handed alpha
Helix 71	AH8	D	745	762	Right-handed alpha
Helix 72	AH9	D	765	776	Right-handed alpha
Helix 73	AI1	D	781	785	Right-handed 310
Helix 74	AI2	D	791	796	Right-handed 310
Helix 75	AI3	D	821	831	Right-handed alpha
Helix 76	AI4	D	832	838	Right-handed alpha

There are 22 sheets in PDB entry 5OMW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	74	first strand
Strand 2	A	34	39	parallel
Strand 3	A	524	530	parallel
Strand 4	A	560	566	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	79	first strand
Strand 2	A	125	126	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	166	first strand
Strand 2	A	149	159	anti-parallel
Strand 3	A	184	193	anti-parallel
Strand 4	A	420	421	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	247	first strand
Strand 2	A	226	234	anti-parallel
Strand 3	A	409	415	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	310	first strand
Strand 2	A	317	323	anti-parallel
Strand 3	A	258	261	parallel
Strand 4	A	334	337	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	424	first strand
Strand 2	A	489	490	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	444	first strand
Strand 2	A	434	437	anti-parallel
Strand 3	A	481	485	anti-parallel
Strand 4	A	475	478	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	583	586	first strand
Strand 2	A	569	577	anti-parallel
Strand 3	A	613	619	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	583	586	first strand
Strand 2	A	569	577	anti-parallel
Strand 3	A	656	657	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	591	595	first strand
Strand 2	A	601	606	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	809	817	first strand
Strand 2	A	799	806	anti-parallel
Strand 3	A	854	860	parallel
Strand 4	A	843	850	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	74	first strand
Strand 2	D	34	39	parallel
Strand 3	D	524	530	parallel
Strand 4	D	560	566	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	79	first strand
Strand 2	D	125	126	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	166	first strand
Strand 2	D	149	159	anti-parallel
Strand 3	D	184	193	anti-parallel
Strand 4	D	420	421	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	172	first strand
Strand 2	D	175	176	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	243	247	first strand
Strand 2	D	226	237	anti-parallel
Strand 3	D	302	310	anti-parallel
Strand 4	D	317	323	anti-parallel
Strand 5	D	258	262	parallel
Strand 6	D	334	337	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	243	247	first strand
Strand 2	D	226	237	anti-parallel
Strand 3	D	409	415	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	423	424	first strand
Strand 2	D	489	490	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	442	444	first strand
Strand 2	D	434	437	anti-parallel
Strand 3	D	481	485	anti-parallel
Strand 4	D	475	478	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	583	586	first strand
Strand 2	D	569	577	anti-parallel
Strand 3	D	611	619	anti-parallel
Strand 4	D	601	605	anti-parallel
Strand 5	D	592	595	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	583	586	first strand
Strand 2	D	569	577	anti-parallel
Strand 3	D	656	657	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	809	817	first strand
Strand 2	D	799	806	anti-parallel
Strand 3	D	854	859	parallel
Strand 4	D	844	850	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OMW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OMW