Analysis of interatomic Contacts of Structural Units in PDB entry:
5ONC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ONC entry

There are 2 chains in PDB entry 5ONC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 0ILE 391
B
MET 1ILE 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5ONC. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
25 44Right-handed alpha
Helix 2
AA2
A
48 52Right-handed 310
Helix 3
AA3
A
69 78Right-handed alpha
Helix 4
AA4
A
97 109Right-handed alpha
Helix 5
AA5
A
148 162Right-handed alpha
Helix 6
AA6
A
165 186Right-handed alpha
Helix 7
AA7
A
224 231Right-handed alpha
Helix 8
AA8
A
260 266Right-handed alpha
Helix 9
AA9
A
283 289Right-handed 310
Helix 10
AB1
A
290 303Right-handed alpha
Helix 11
AB2
A
305 309Right-handed 310
Helix 12
AB3
A
318 330Right-handed alpha
Helix 13
AB4
A
332 336Right-handed 310
Helix 14
AB5
A
341 346Right-handed alpha
Helix 15
AB6
A
348 350Right-handed 310
Helix 16
AB7
A
351 368Right-handed alpha
Helix 17
AB8
B
25 43Right-handed alpha
Helix 18
AB9
B
48 52Right-handed 310
Helix 19
AC1
B
69 78Right-handed alpha
Helix 20
AC2
B
97 109Right-handed alpha
Helix 21
AC3
B
150 162Right-handed alpha
Helix 22
AC4
B
165 186Right-handed alpha
Helix 23
AC5
B
224 231Right-handed alpha
Helix 24
AC6
B
260 266Right-handed alpha
Helix 25
AC7
B
283 288Right-handed 310
Helix 26
AC8
B
289 303Right-handed alpha
Helix 27
AC9
B
305 309Right-handed 310
Helix 28
AD1
B
318 330Right-handed alpha
Helix 29
AD2
B
332 336Right-handed 310
Helix 30
AD3
B
341 346Right-handed alpha
Helix 31
AD4
B
348 350Right-handed 310
Helix 32
AD5
B
351 368Right-handed alpha
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There are 7 sheets in PDB entry 5ONC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
4 11first strand
Strand 2
A
249 259anti-parallel
Strand 3
A
15 16anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
4 11first strand
Strand 2
A
249 259anti-parallel
Strand 3
A
114 121anti-parallel
Strand 4
A
54 57parallel
Strand 5
B
85 88parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
85 88first strand
Strand 2
B
54 57parallel
Strand 3
B
114 121parallel
Strand 4
B
249 259anti-parallel
Strand 5
B
4 11anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
85 88first strand
Strand 2
B
54 57parallel
Strand 3
B
114 121parallel
Strand 4
B
249 259anti-parallel
Strand 5
B
15 16anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
196 201first strand
Strand 2
A
207 214anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
272 281first strand
Strand 2
A
382 390anti-parallel
Strand 3
A
371 378anti-parallel
Strand 4
A
311 314parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
272 281first strand
Strand 2
B
382 390anti-parallel
Strand 3
B
371 378anti-parallel
Strand 4
B
311 314parallel
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