Analysis of interatomic Contacts of Structural Units in PDB entry:
5ONH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ONH entry

There are 4 chains in PDB entry 5ONH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 860
B	G 1	A 76
D	MET 1	GLY 860
E	G 1	A 76

There are 65 helices in PDB entry 5ONH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	22	Right-handed alpha
Helix 2	AA2	A	49	69	Right-handed alpha
Helix 3	AA3	A	84	93	Right-handed alpha
Helix 4	AA4	A	96	116	Right-handed alpha
Helix 5	AA5	A	129	146	Right-handed alpha
Helix 6	AA6	A	195	197	Right-handed 310
Helix 7	AA7	A	198	205	Right-handed alpha
Helix 8	AA8	A	213	225	Right-handed alpha
Helix 9	AA9	A	249	256	Right-handed 310
Helix 10	AB1	A	265	272	Right-handed alpha
Helix 11	AB2	A	275	285	Right-handed alpha
Helix 12	AB3	A	291	298	Right-handed alpha
Helix 13	AB4	A	338	341	Right-handed 310
Helix 14	AB5	A	342	353	Right-handed alpha
Helix 15	AB6	A	384	388	Right-handed 310
Helix 16	AB7	A	391	407	Right-handed alpha
Helix 17	AB8	A	446	450	Right-handed 310
Helix 18	AB9	A	465	470	Right-handed alpha
Helix 19	AC1	A	492	497	Right-handed alpha
Helix 20	AC2	A	498	503	Right-handed alpha
Helix 21	AC3	A	514	522	Right-handed alpha
Helix 22	AC4	A	532	534	Right-handed 310
Helix 23	AC5	A	535	551	Right-handed alpha
Helix 24	AC6	A	630	637	Right-handed alpha
Helix 25	AC7	A	638	650	Right-handed alpha
Helix 26	AC8	A	662	684	Right-handed alpha
Helix 27	AC9	A	695	718	Right-handed alpha
Helix 28	AD1	A	721	739	Right-handed alpha
Helix 29	AD2	A	743	762	Right-handed alpha
Helix 30	AD3	A	765	776	Right-handed alpha
Helix 31	AD4	A	821	832	Right-handed alpha
Helix 32	AD5	A	832	840	Right-handed alpha
Helix 33	AD6	D	6	22	Right-handed alpha
Helix 34	AD7	D	49	69	Right-handed alpha
Helix 35	AD8	D	84	93	Right-handed alpha
Helix 36	AD9	D	96	116	Right-handed alpha
Helix 37	AE1	D	120	124	Right-handed 310
Helix 38	AE2	D	129	147	Right-handed alpha
Helix 39	AE3	D	195	197	Right-handed 310
Helix 40	AE4	D	198	205	Right-handed alpha
Helix 41	AE5	D	213	225	Right-handed alpha
Helix 42	AE6	D	249	256	Right-handed 310
Helix 43	AE7	D	265	272	Right-handed alpha
Helix 44	AE8	D	275	285	Right-handed alpha
Helix 45	AE9	D	291	298	Right-handed alpha
Helix 46	AF1	D	338	341	Right-handed 310
Helix 47	AF2	D	342	352	Right-handed alpha
Helix 48	AF3	D	384	388	Right-handed 310
Helix 49	AF4	D	391	407	Right-handed alpha
Helix 50	AF5	D	465	470	Right-handed alpha
Helix 51	AF6	D	492	497	Right-handed alpha
Helix 52	AF7	D	498	503	Right-handed alpha
Helix 53	AF8	D	514	522	Right-handed alpha
Helix 54	AF9	D	532	534	Right-handed 310
Helix 55	AG1	D	535	551	Right-handed alpha
Helix 56	AG2	D	630	637	Right-handed alpha
Helix 57	AG3	D	638	650	Right-handed alpha
Helix 58	AG4	D	662	684	Right-handed alpha
Helix 59	AG5	D	695	718	Right-handed alpha
Helix 60	AG6	D	721	739	Right-handed alpha
Helix 61	AG7	D	743	762	Right-handed alpha
Helix 62	AG8	D	765	776	Right-handed alpha
Helix 63	AG9	D	792	796	Right-handed 310
Helix 64	AH1	D	821	830	Right-handed alpha
Helix 65	AH2	D	832	839	Right-handed alpha

There are 21 sheets in PDB entry 5ONH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	74	first strand
Strand 2	A	34	39	parallel
Strand 3	A	524	530	parallel
Strand 4	A	560	566	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	79	first strand
Strand 2	A	120	126	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	165	first strand
Strand 2	A	149	159	anti-parallel
Strand 3	A	184	193	anti-parallel
Strand 4	A	420	421	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	247	first strand
Strand 2	A	226	236	anti-parallel
Strand 3	A	302	310	anti-parallel
Strand 4	A	317	323	anti-parallel
Strand 5	A	258	261	parallel
Strand 6	A	334	337	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	247	first strand
Strand 2	A	226	236	anti-parallel
Strand 3	A	409	415	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	424	first strand
Strand 2	A	489	490	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	444	first strand
Strand 2	A	434	437	anti-parallel
Strand 3	A	481	485	anti-parallel
Strand 4	A	475	478	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	583	586	first strand
Strand 2	A	569	577	anti-parallel
Strand 3	A	613	619	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	583	586	first strand
Strand 2	A	569	577	anti-parallel
Strand 3	A	656	657	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	591	595	first strand
Strand 2	A	601	606	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	809	817	first strand
Strand 2	A	799	806	anti-parallel
Strand 3	A	854	859	parallel
Strand 4	A	844	850	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	74	first strand
Strand 2	D	33	39	parallel
Strand 3	D	524	530	parallel
Strand 4	D	560	566	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	155	first strand
Strand 2	D	187	193	anti-parallel
Strand 3	D	420	421	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	159	first strand
Strand 2	D	164	165	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	243	247	first strand
Strand 2	D	226	236	anti-parallel
Strand 3	D	302	310	anti-parallel
Strand 4	D	317	323	anti-parallel
Strand 5	D	258	261	parallel
Strand 6	D	334	337	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	243	247	first strand
Strand 2	D	226	236	anti-parallel
Strand 3	D	409	415	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	442	444	first strand
Strand 2	D	434	437	anti-parallel
Strand 3	D	482	485	anti-parallel
Strand 4	D	475	477	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	583	586	first strand
Strand 2	D	569	577	anti-parallel
Strand 3	D	613	619	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	583	586	first strand
Strand 2	D	569	577	anti-parallel
Strand 3	D	656	657	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	592	595	first strand
Strand 2	D	601	605	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	810	817	first strand
Strand 2	D	799	806	anti-parallel
Strand 3	D	854	859	parallel
Strand 4	D	844	850	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ONH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ONH