Analysis of interatomic Contacts of Structural Units in PDB entry:
5ONU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ONU entry

There are 3 chains in PDB entry 5ONU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 32	HIS 351
B	GLY 32	HIS 351
C	GLY 32	HIS 351

There are 12 helices in PDB entry 5ONU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	138	143	Right-handed alpha
Helix 2	AA2	A	159	162	Right-handed 310
Helix 3	AA3	A	200	204	Right-handed 310
Helix 4	AA4	A	335	339	Right-handed 310
Helix 5	AA5	B	138	143	Right-handed alpha
Helix 6	AA6	B	159	162	Right-handed 310
Helix 7	AA7	B	200	204	Right-handed 310
Helix 8	AA8	B	335	339	Right-handed 310
Helix 9	AA9	C	138	143	Right-handed alpha
Helix 10	AB1	C	159	162	Right-handed 310
Helix 11	AB2	C	200	204	Right-handed 310
Helix 12	AB3	C	335	339	Right-handed 310

There are 12 sheets in PDB entry 5ONU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 17 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	83	first strand
Strand 2	A	50	64	anti-parallel
Strand 3	A	341	349	anti-parallel
Strand 4	A	317	326	anti-parallel
Strand 5	A	299	314	anti-parallel
Strand 6	A	286	296	anti-parallel
Strand 7	A	269	281	anti-parallel
Strand 8	A	254	266	anti-parallel
Strand 9	A	240	251	anti-parallel
Strand 10	A	228	237	anti-parallel
Strand 11	A	214	222	anti-parallel
Strand 12	A	178	185	anti-parallel
Strand 13	A	168	175	anti-parallel
Strand 14	A	127	133	anti-parallel
Strand 15	A	112	124	anti-parallel
Strand 16	A	89	100	anti-parallel
Strand 17	A	75	86	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	65	first strand
Strand 2	A	68	71	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	192	first strand
Strand 2	A	206	209	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	46	first strand
Strand 2	A	51	54	anti-parallel

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There are 17 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	83	first strand
Strand 2	B	50	64	anti-parallel
Strand 3	B	341	349	anti-parallel
Strand 4	B	317	326	anti-parallel
Strand 5	B	299	314	anti-parallel
Strand 6	B	285	296	anti-parallel
Strand 7	B	269	282	anti-parallel
Strand 8	B	254	266	anti-parallel
Strand 9	B	240	251	anti-parallel
Strand 10	B	228	237	anti-parallel
Strand 11	B	214	222	anti-parallel
Strand 12	B	178	185	anti-parallel
Strand 13	B	168	175	anti-parallel
Strand 14	B	127	133	anti-parallel
Strand 15	B	112	124	anti-parallel
Strand 16	B	89	100	anti-parallel
Strand 17	B	75	86	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	65	first strand
Strand 2	B	68	71	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	192	first strand
Strand 2	B	206	209	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	47	first strand
Strand 2	B	50	54	anti-parallel

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There are 17 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	83	first strand
Strand 2	C	50	64	anti-parallel
Strand 3	C	341	349	anti-parallel
Strand 4	C	317	326	anti-parallel
Strand 5	C	299	314	anti-parallel
Strand 6	C	286	296	anti-parallel
Strand 7	C	269	281	anti-parallel
Strand 8	C	254	266	anti-parallel
Strand 9	C	240	251	anti-parallel
Strand 10	C	228	237	anti-parallel
Strand 11	C	214	222	anti-parallel
Strand 12	C	178	185	anti-parallel
Strand 13	C	168	175	anti-parallel
Strand 14	C	127	133	anti-parallel
Strand 15	C	112	124	anti-parallel
Strand 16	C	89	100	anti-parallel
Strand 17	C	75	86	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	65	first strand
Strand 2	C	68	71	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	192	first strand
Strand 2	C	206	209	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	47	first strand
Strand 2	C	50	54	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ONU

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ONU