Analysis of interatomic Contacts of Structural Units in PDB entry:
5OOB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OOB entry

There are 11 chains in PDB entry 5OOB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 26	ALA 790
B	GLY 4	ASN 155
C	ASP 23	ALA 790
D	GLY 4	GLN 154
E	LYS 361	PHE 380
F	ALA 24	ALA 790
G	GLY 4	LEU 152
I	GLU 28	ALA 790
J	GLY 4	LYS 151
K	LYS 361	PHE 380
Z	LYS 361	PHE 380

There are196 helices in PDB entry 5OOB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	38	Right-handed alpha
Helix 2	AA2	A	45	60	Right-handed alpha
Helix 3	AA3	A	60	79	Right-handed alpha
Helix 4	AA4	A	82	97	Right-handed alpha
Helix 5	AA5	A	97	118	Right-handed alpha
Helix 6	AA6	A	120	137	Right-handed alpha
Helix 7	AA7	A	141	154	Right-handed alpha
Helix 8	AA8	A	155	158	Right-handed 310
Helix 9	AA9	A	162	175	Right-handed alpha
Helix 10	AB1	A	176	188	Right-handed alpha
Helix 11	AB2	A	188	205	Right-handed alpha
Helix 12	AB3	A	210	215	Right-handed alpha
Helix 13	AB4	A	227	242	Right-handed alpha
Helix 14	AB5	A	251	255	Right-handed 310
Helix 15	AB6	A	256	262	Right-handed alpha
Helix 16	AB7	A	293	297	Right-handed 310
Helix 17	AB8	A	308	326	Right-handed alpha
Helix 18	AB9	A	328	338	Right-handed alpha
Helix 19	AC1	A	346	360	Right-handed alpha
Helix 20	AC2	A	368	383	Right-handed alpha
Helix 21	AC3	A	386	401	Right-handed alpha
Helix 22	AC4	A	402	405	Right-handed 310
Helix 23	AC5	A	406	423	Right-handed alpha
Helix 24	AC6	A	429	437	Right-handed 310
Helix 25	AC7	A	443	460	Right-handed alpha
Helix 26	AC8	A	461	468	Right-handed alpha
Helix 27	AC9	A	470	476	Right-handed 310
Helix 28	AD1	A	497	510	Right-handed alpha
Helix 29	AD2	A	513	522	Right-handed alpha
Helix 30	AD3	A	540	555	Right-handed alpha
Helix 31	AD4	A	558	569	Right-handed alpha
Helix 32	AD5	A	569	577	Right-handed alpha
Helix 33	AD6	A	579	595	Right-handed alpha
Helix 34	AD7	A	597	611	Right-handed alpha
Helix 35	AD8	A	615	624	Right-handed alpha
Helix 36	AD9	A	625	632	Right-handed 310
Helix 37	AE1	A	634	668	Right-handed alpha
Helix 38	AE2	A	688	732	Right-handed alpha
Helix 39	AE3	A	737	759	Right-handed alpha
Helix 40	AE4	A	761	769	Right-handed alpha
Helix 41	AE5	A	775	788	Right-handed alpha
Helix 42	AE6	B	6	11	Right-handed alpha
Helix 43	AE7	B	12	16	Right-handed 310
Helix 44	AE8	B	28	37	Right-handed alpha
Helix 45	AE9	B	52	61	Right-handed alpha
Helix 46	AF1	B	62	64	Right-handed 310
Helix 47	AF2	B	90	101	Right-handed alpha
Helix 48	AF3	B	134	139	Right-handed alpha
Helix 49	AF4	B	143	147	Right-handed 310
Helix 50	AF5	B	150	155	Right-handed alpha
Helix 51	AF6	C	24	38	Right-handed alpha
Helix 52	AF7	C	45	60	Right-handed alpha
Helix 53	AF8	C	60	79	Right-handed alpha
Helix 54	AF9	C	82	97	Right-handed alpha
Helix 55	AG1	C	97	118	Right-handed alpha
Helix 56	AG2	C	120	137	Right-handed alpha
Helix 57	AG3	C	141	154	Right-handed alpha
Helix 58	AG4	C	155	158	Right-handed 310
Helix 59	AG5	C	162	175	Right-handed alpha
Helix 60	AG6	C	176	188	Right-handed alpha
Helix 61	AG7	C	188	205	Right-handed alpha
Helix 62	AG8	C	210	215	Right-handed alpha
Helix 63	AG9	C	227	242	Right-handed alpha
Helix 64	AH1	C	251	255	Right-handed 310
Helix 65	AH2	C	256	262	Right-handed alpha
Helix 66	AH3	C	293	297	Right-handed 310
Helix 67	AH4	C	308	326	Right-handed alpha
Helix 68	AH5	C	328	338	Right-handed alpha
Helix 69	AH6	C	346	360	Right-handed alpha
Helix 70	AH7	C	368	383	Right-handed alpha
Helix 71	AH8	C	386	401	Right-handed alpha
Helix 72	AH9	C	402	405	Right-handed 310
Helix 73	AI1	C	406	423	Right-handed alpha
Helix 74	AI2	C	429	437	Right-handed 310
Helix 75	AI3	C	443	460	Right-handed alpha
Helix 76	AI4	C	461	468	Right-handed alpha
Helix 77	AI5	C	470	476	Right-handed 310
Helix 78	AI6	C	497	510	Right-handed alpha
Helix 79	AI7	C	513	522	Right-handed alpha
Helix 80	AI8	C	540	555	Right-handed alpha
Helix 81	AI9	C	558	569	Right-handed alpha
Helix 82	AJ1	C	569	577	Right-handed alpha
Helix 83	AJ2	C	579	595	Right-handed alpha
Helix 84	AJ3	C	597	611	Right-handed alpha
Helix 85	AJ4	C	615	624	Right-handed alpha
Helix 86	AJ5	C	625	632	Right-handed 310
Helix 87	AJ6	C	634	664	Right-handed alpha
Helix 88	AJ7	C	691	732	Right-handed alpha
Helix 89	AJ8	C	737	759	Right-handed alpha
Helix 90	AJ9	C	761	769	Right-handed alpha
Helix 91	AK1	C	775	788	Right-handed alpha
Helix 92	AK2	D	6	11	Right-handed alpha
Helix 93	AK3	D	12	16	Right-handed 310
Helix 94	AK4	D	28	37	Right-handed alpha
Helix 95	AK5	D	52	61	Right-handed alpha
Helix 96	AK6	D	62	64	Right-handed 310
Helix 97	AK7	D	90	101	Right-handed alpha
Helix 98	AK8	D	134	139	Right-handed alpha
Helix 99	AK9	D	143	147	Right-handed 310
Helix 100	AL1	F	25	38	Right-handed alpha
Helix 101	AL2	F	45	60	Right-handed alpha
Helix 102	AL3	F	60	79	Right-handed alpha
Helix 103	AL4	F	82	97	Right-handed alpha
Helix 104	AL5	F	97	118	Right-handed alpha
Helix 105	AL6	F	120	137	Right-handed alpha
Helix 106	AL7	F	141	154	Right-handed alpha
Helix 107	AL8	F	155	158	Right-handed 310
Helix 108	AL9	F	162	175	Right-handed alpha
Helix 109	AM1	F	176	188	Right-handed alpha
Helix 110	AM2	F	188	205	Right-handed alpha
Helix 111	AM3	F	210	215	Right-handed alpha
Helix 112	AM4	F	227	242	Right-handed alpha
Helix 113	AM5	F	251	255	Right-handed 310
Helix 114	AM6	F	256	262	Right-handed alpha
Helix 115	AM7	F	293	297	Right-handed 310
Helix 116	AM8	F	308	326	Right-handed alpha
Helix 117	AM9	F	328	338	Right-handed alpha
Helix 118	AN1	F	346	360	Right-handed alpha
Helix 119	AN2	F	368	383	Right-handed alpha
Helix 120	AN3	F	386	401	Right-handed alpha
Helix 121	AN4	F	402	405	Right-handed 310
Helix 122	AN5	F	406	423	Right-handed alpha
Helix 123	AN6	F	429	437	Right-handed 310
Helix 124	AN7	F	443	460	Right-handed alpha
Helix 125	AN8	F	461	468	Right-handed alpha
Helix 126	AN9	F	470	476	Right-handed 310
Helix 127	AO1	F	499	510	Right-handed alpha
Helix 128	AO2	F	513	522	Right-handed alpha
Helix 129	AO3	F	541	555	Right-handed alpha
Helix 130	AO4	F	558	569	Right-handed alpha
Helix 131	AO5	F	569	577	Right-handed alpha
Helix 132	AO6	F	579	595	Right-handed alpha
Helix 133	AO7	F	597	611	Right-handed alpha
Helix 134	AO8	F	615	624	Right-handed alpha
Helix 135	AO9	F	625	632	Right-handed 310
Helix 136	AP1	F	634	665	Right-handed alpha
Helix 137	AP2	F	689	732	Right-handed alpha
Helix 138	AP3	F	737	759	Right-handed alpha
Helix 139	AP4	F	761	769	Right-handed alpha
Helix 140	AP5	F	775	788	Right-handed alpha
Helix 141	AP6	G	6	11	Right-handed alpha
Helix 142	AP7	G	12	16	Right-handed 310
Helix 143	AP8	G	28	37	Right-handed alpha
Helix 144	AP9	G	52	61	Right-handed alpha
Helix 145	AQ1	G	62	64	Right-handed 310
Helix 146	AQ2	G	90	101	Right-handed alpha
Helix 147	AQ3	G	134	139	Right-handed alpha
Helix 148	AQ4	G	143	147	Right-handed 310
Helix 149	AQ5	I	29	38	Right-handed alpha
Helix 150	AQ6	I	45	79	Right-handed alpha
Helix 151	AQ7	I	82	97	Right-handed alpha
Helix 152	AQ8	I	97	118	Right-handed alpha
Helix 153	AQ9	I	120	137	Right-handed alpha
Helix 154	AR1	I	141	154	Right-handed alpha
Helix 155	AR2	I	155	158	Right-handed 310
Helix 156	AR3	I	162	175	Right-handed alpha
Helix 157	AR4	I	176	188	Right-handed alpha
Helix 158	AR5	I	188	205	Right-handed alpha
Helix 159	AR6	I	210	215	Right-handed alpha
Helix 160	AR7	I	227	242	Right-handed alpha
Helix 161	AR8	I	251	255	Right-handed 310
Helix 162	AR9	I	256	262	Right-handed alpha
Helix 163	AS1	I	293	297	Right-handed 310
Helix 164	AS2	I	308	326	Right-handed alpha
Helix 165	AS3	I	328	338	Right-handed alpha
Helix 166	AS4	I	346	360	Right-handed alpha
Helix 167	AS5	I	368	383	Right-handed alpha
Helix 168	AS6	I	386	401	Right-handed alpha
Helix 169	AS7	I	402	405	Right-handed 310
Helix 170	AS8	I	406	423	Right-handed alpha
Helix 171	AS9	I	429	437	Right-handed 310
Helix 172	AT1	I	443	460	Right-handed alpha
Helix 173	AT2	I	461	468	Right-handed alpha
Helix 174	AT3	I	470	476	Right-handed 310
Helix 175	AT4	I	497	510	Right-handed alpha
Helix 176	AT5	I	513	523	Right-handed alpha
Helix 177	AT6	I	541	555	Right-handed alpha
Helix 178	AT7	I	558	569	Right-handed alpha
Helix 179	AT8	I	569	577	Right-handed alpha
Helix 180	AT9	I	579	595	Right-handed alpha
Helix 181	AU1	I	597	611	Right-handed alpha
Helix 182	AU2	I	615	624	Right-handed alpha
Helix 183	AU3	I	625	632	Right-handed 310
Helix 184	AU4	I	634	665	Right-handed alpha
Helix 185	AU5	I	688	732	Right-handed alpha
Helix 186	AU6	I	737	759	Right-handed alpha
Helix 187	AU7	I	761	769	Right-handed alpha
Helix 188	AU8	I	775	788	Right-handed alpha
Helix 189	AU9	J	6	11	Right-handed alpha
Helix 190	AV1	J	12	16	Right-handed 310
Helix 191	AV2	J	28	37	Right-handed alpha
Helix 192	AV3	J	52	61	Right-handed alpha
Helix 193	AV4	J	62	64	Right-handed 310
Helix 194	AV5	J	90	101	Right-handed alpha
Helix 195	AV6	J	134	139	Right-handed alpha
Helix 196	AV7	J	143	147	Right-handed 310

There are 4 sheets in PDB entry 5OOB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	73	first strand
Strand 2	B	80	88	anti-parallel
Strand 3	B	41	45	anti-parallel
Strand 4	B	112	115	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	73	first strand
Strand 2	D	80	88	anti-parallel
Strand 3	D	41	45	anti-parallel
Strand 4	D	112	115	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	73	first strand
Strand 2	G	80	88	anti-parallel
Strand 3	G	41	45	anti-parallel
Strand 4	G	112	115	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	66	73	first strand
Strand 2	J	80	88	anti-parallel
Strand 3	J	41	45	anti-parallel
Strand 4	J	112	115	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OOB

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OOB