Analysis of interatomic Contacts of Structural Units in PDB entry:
5OOE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OOE entry

There are 10 chains in PDB entry 5OOE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 5	GLU 72
A	GLY 74	HIS 371
B	THR 5	GLU 72
B	GLY 74	HIS 371
C	THR 5	GLU 72
C	GLY 74	HIS 371
D	THR 5	GLU 72
D	GLY 74	HIS 371
E	THR 5	GLU 72
E	GLY 74	HIS 371

There are 95 helices in PDB entry 5OOE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	61	Right-handed alpha
Helix 2	AA2	A	78	92	Right-handed alpha
Helix 3	AA3	A	97	101	Right-handed 310
Helix 4	AA4	A	112	126	Right-handed alpha
Helix 5	AA5	A	137	146	Right-handed alpha
Helix 6	AA6	A	172	175	Right-handed 310
Helix 7	AA7	A	181	193	Right-handed alpha
Helix 8	AA8	A	202	217	Right-handed alpha
Helix 9	AA9	A	222	231	Right-handed alpha
Helix 10	AB1	A	252	260	Right-handed alpha
Helix 11	AB2	A	273	284	Right-handed alpha
Helix 12	AB3	A	286	295	Right-handed alpha
Helix 13	AB4	A	301	306	Right-handed 310
Helix 14	AB5	A	308	321	Right-handed alpha
Helix 15	AB6	A	334	336	Right-handed 310
Helix 16	AB7	A	337	349	Right-handed alpha
Helix 17	AB8	A	350	356	Right-handed 310
Helix 18	AB9	A	359	366	Right-handed alpha
Helix 19	AC1	A	367	371	Right-handed 310
Helix 20	AC2	B	55	61	Right-handed alpha
Helix 21	AC3	B	78	92	Right-handed alpha
Helix 22	AC4	B	97	101	Right-handed 310
Helix 23	AC5	B	112	126	Right-handed alpha
Helix 24	AC6	B	137	146	Right-handed alpha
Helix 25	AC7	B	172	175	Right-handed 310
Helix 26	AC8	B	181	193	Right-handed alpha
Helix 27	AC9	B	202	217	Right-handed alpha
Helix 28	AD1	B	222	231	Right-handed alpha
Helix 29	AD2	B	252	260	Right-handed alpha
Helix 30	AD3	B	273	284	Right-handed alpha
Helix 31	AD4	B	286	295	Right-handed alpha
Helix 32	AD5	B	301	306	Right-handed 310
Helix 33	AD6	B	308	321	Right-handed alpha
Helix 34	AD7	B	334	336	Right-handed 310
Helix 35	AD8	B	337	349	Right-handed alpha
Helix 36	AD9	B	350	356	Right-handed 310
Helix 37	AE1	B	359	366	Right-handed alpha
Helix 38	AE2	B	367	371	Right-handed 310
Helix 39	AE3	C	55	61	Right-handed alpha
Helix 40	AE4	C	78	92	Right-handed alpha
Helix 41	AE5	C	97	101	Right-handed 310
Helix 42	AE6	C	112	126	Right-handed alpha
Helix 43	AE7	C	137	146	Right-handed alpha
Helix 44	AE8	C	172	175	Right-handed 310
Helix 45	AE9	C	181	193	Right-handed alpha
Helix 46	AF1	C	202	217	Right-handed alpha
Helix 47	AF2	C	222	231	Right-handed alpha
Helix 48	AF3	C	252	260	Right-handed alpha
Helix 49	AF4	C	273	284	Right-handed alpha
Helix 50	AF5	C	286	295	Right-handed alpha
Helix 51	AF6	C	301	306	Right-handed 310
Helix 52	AF7	C	308	321	Right-handed alpha
Helix 53	AF8	C	334	336	Right-handed 310
Helix 54	AF9	C	337	349	Right-handed alpha
Helix 55	AG1	C	350	356	Right-handed 310
Helix 56	AG2	C	359	366	Right-handed alpha
Helix 57	AG3	C	367	371	Right-handed 310
Helix 58	AG4	D	55	61	Right-handed alpha
Helix 59	AG5	D	78	92	Right-handed alpha
Helix 60	AG6	D	97	101	Right-handed 310
Helix 61	AG7	D	112	126	Right-handed alpha
Helix 62	AG8	D	137	146	Right-handed alpha
Helix 63	AG9	D	172	175	Right-handed 310
Helix 64	AH1	D	181	193	Right-handed alpha
Helix 65	AH2	D	202	217	Right-handed alpha
Helix 66	AH3	D	222	231	Right-handed alpha
Helix 67	AH4	D	252	260	Right-handed alpha
Helix 68	AH5	D	273	284	Right-handed alpha
Helix 69	AH6	D	286	295	Right-handed alpha
Helix 70	AH7	D	301	306	Right-handed 310
Helix 71	AH8	D	308	321	Right-handed alpha
Helix 72	AH9	D	334	336	Right-handed 310
Helix 73	AI1	D	337	349	Right-handed alpha
Helix 74	AI2	D	350	356	Right-handed 310
Helix 75	AI3	D	359	366	Right-handed alpha
Helix 76	AI4	D	367	371	Right-handed 310
Helix 77	AI5	E	55	61	Right-handed alpha
Helix 78	AI6	E	78	92	Right-handed alpha
Helix 79	AI7	E	97	101	Right-handed 310
Helix 80	AI8	E	112	126	Right-handed alpha
Helix 81	AI9	E	137	146	Right-handed alpha
Helix 82	AJ1	E	172	175	Right-handed 310
Helix 83	AJ2	E	181	193	Right-handed alpha
Helix 84	AJ3	E	202	217	Right-handed alpha
Helix 85	AJ4	E	222	231	Right-handed alpha
Helix 86	AJ5	E	252	260	Right-handed alpha
Helix 87	AJ6	E	273	284	Right-handed alpha
Helix 88	AJ7	E	286	295	Right-handed alpha
Helix 89	AJ8	E	301	306	Right-handed 310
Helix 90	AJ9	E	308	321	Right-handed alpha
Helix 91	AK1	E	334	336	Right-handed 310
Helix 92	AK2	E	337	349	Right-handed alpha
Helix 93	AK3	E	350	356	Right-handed 310
Helix 94	AK4	E	359	366	Right-handed alpha
Helix 95	AK5	E	367	371	Right-handed 310

There are 30 sheets in PDB entry 5OOE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	65	68	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	176	178	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	247	250	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	16	21	anti-parallel
Strand 3	B	8	12	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	357	358	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	176	178	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	297	300	parallel
Strand 5	B	329	330	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	16	21	anti-parallel
Strand 3	C	8	12	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	176	178	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	150	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	16	21	anti-parallel
Strand 3	D	8	12	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	65	68	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	176	178	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	150	155	anti-parallel
Strand 4	D	297	300	parallel
Strand 5	D	329	330	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	241	first strand
Strand 2	D	247	250	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	32	first strand
Strand 2	E	16	21	anti-parallel
Strand 3	E	8	12	anti-parallel
Strand 4	E	103	107	parallel
Strand 5	E	131	136	parallel
Strand 6	E	357	358	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	54	first strand
Strand 2	E	35	38	anti-parallel
Strand 3	E	65	68	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	75	76	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	170	first strand
Strand 2	E	160	166	anti-parallel
Strand 3	E	176	178	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	170	first strand
Strand 2	E	160	166	anti-parallel
Strand 3	E	150	155	anti-parallel
Strand 4	E	297	300	parallel
Strand 5	E	329	330	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	241	first strand
Strand 2	E	247	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OOE

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OOE