Analysis of interatomic Contacts of Structural Units in PDB entry:
5OOO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OOO entry

There are 2 chains in PDB entry 5OOO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 79PRO 244
B
 ALA 80ILE 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5OOO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
86 94Right-handed alpha
Helix 2
AA2
A
97 103Right-handed alpha
Helix 3
AA3
A
104 111Right-handed alpha
Helix 4
AA4
A
120 127Right-handed alpha
Helix 5
AA5
A
133 150Right-handed alpha
Helix 6
AA6
A
154 174Right-handed alpha
Helix 7
AA7
A
176 180Right-handed 310
Helix 8
AA8
A
184 207Right-handed alpha
Helix 9
AA9
A
212 229Right-handed alpha
Helix 10
AB1
A
230 234Right-handed 310
Helix 11
AB2
B
86 94Right-handed alpha
Helix 12
AB3
B
97 103Right-handed alpha
Helix 13
AB4
B
104 111Right-handed alpha
Helix 14
AB5
B
120 127Right-handed alpha
Helix 15
AB6
B
133 147Right-handed alpha
Helix 16
AB7
B
161 174Right-handed alpha
Helix 17
AB8
B
176 180Right-handed 310
Helix 18
AB9
B
184 207Right-handed alpha
Helix 19
AC1
B
212 229Right-handed alpha
Helix 20
AC2
B
230 234Right-handed 310
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There are no sheets in PDB entry 5OOO
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il