Analysis of interatomic Contacts of Structural Units in PDB entry:
5OOQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OOQ entry

There are 2 chains in PDB entry 5OOQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 80	LEU 1071
B	MET 80	GLY 526

There are 79 helices in PDB entry 5OOQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	151	164	Right-handed alpha
Helix 2	AA2	A	177	190	Right-handed alpha
Helix 3	AA3	A	203	217	Right-handed alpha
Helix 4	AA4	A	239	249	Right-handed alpha
Helix 5	AA5	A	251	254	Right-handed 310
Helix 6	AA6	A	264	269	Right-handed 310
Helix 7	AA7	A	272	282	Right-handed alpha
Helix 8	AA8	A	298	311	Right-handed alpha
Helix 9	AA9	A	349	359	Right-handed alpha
Helix 10	AB1	A	393	404	Right-handed alpha
Helix 11	AB2	A	415	425	Right-handed alpha
Helix 12	AB3	A	433	449	Right-handed alpha
Helix 13	AB4	A	458	470	Right-handed alpha
Helix 14	AB5	A	480	493	Right-handed alpha
Helix 15	AB6	A	533	542	Right-handed alpha
Helix 16	AB7	A	564	573	Right-handed alpha
Helix 17	AB8	A	586	596	Right-handed alpha
Helix 18	AB9	A	600	608	Right-handed alpha
Helix 19	AC1	A	608	616	Right-handed alpha
Helix 20	AC2	A	617	634	Right-handed alpha
Helix 21	AC3	A	639	666	Right-handed alpha
Helix 22	AC4	A	666	671	Right-handed alpha
Helix 23	AC5	A	672	674	Right-handed 310
Helix 24	AC6	A	685	687	Right-handed 310
Helix 25	AC7	A	731	735	Right-handed 310
Helix 26	AC8	A	763	765	Right-handed 310
Helix 27	AC9	A	785	801	Right-handed alpha
Helix 28	AD1	A	818	837	Right-handed alpha
Helix 29	AD2	A	838	843	Right-handed 310
Helix 30	AD3	A	845	875	Right-handed alpha
Helix 31	AD4	A	878	892	Right-handed alpha
Helix 32	AD5	A	902	911	Right-handed alpha
Helix 33	AD6	A	915	925	Right-handed alpha
Helix 34	AD7	A	932	942	Right-handed alpha
Helix 35	AD8	A	956	980	Right-handed alpha
Helix 36	AD9	A	985	992	Right-handed alpha
Helix 37	AE1	A	997	1006	Right-handed alpha
Helix 38	AE2	A	1009	1015	Right-handed alpha
Helix 39	AE3	A	1020	1046	Right-handed alpha
Helix 40	AE4	A	1047	1062	Right-handed alpha
Helix 41	AE5	B	151	164	Right-handed alpha
Helix 42	AE6	B	177	190	Right-handed alpha
Helix 43	AE7	B	201	216	Right-handed alpha
Helix 44	AE8	B	239	249	Right-handed alpha
Helix 45	AE9	B	250	254	Right-handed 310
Helix 46	AF1	B	264	269	Right-handed 310
Helix 47	AF2	B	273	282	Right-handed alpha
Helix 48	AF3	B	298	311	Right-handed alpha
Helix 49	AF4	B	349	359	Right-handed alpha
Helix 50	AF5	B	392	404	Right-handed alpha
Helix 51	AF6	B	415	426	Right-handed alpha
Helix 52	AF7	B	433	450	Right-handed alpha
Helix 53	AF8	B	458	470	Right-handed alpha
Helix 54	AF9	B	480	493	Right-handed alpha
Helix 55	AG1	B	533	542	Right-handed alpha
Helix 56	AG2	B	564	573	Right-handed alpha
Helix 57	AG3	B	586	596	Right-handed alpha
Helix 58	AG4	B	600	608	Right-handed alpha
Helix 59	AG5	B	608	634	Right-handed alpha
Helix 60	AG6	B	639	666	Right-handed alpha
Helix 61	AG7	B	666	671	Right-handed alpha
Helix 62	AG8	B	672	674	Right-handed 310
Helix 63	AG9	B	685	687	Right-handed 310
Helix 64	AH1	B	713	715	Right-handed 310
Helix 65	AH2	B	731	735	Right-handed 310
Helix 66	AH3	B	785	801	Right-handed alpha
Helix 67	AH4	B	818	837	Right-handed alpha
Helix 68	AH5	B	838	843	Right-handed 310
Helix 69	AH6	B	845	875	Right-handed alpha
Helix 70	AH7	B	878	893	Right-handed alpha
Helix 71	AH8	B	902	911	Right-handed alpha
Helix 72	AH9	B	915	925	Right-handed alpha
Helix 73	AI1	B	932	942	Right-handed alpha
Helix 74	AI2	B	956	980	Right-handed alpha
Helix 75	AI3	B	985	992	Right-handed alpha
Helix 76	AI4	B	997	1005	Right-handed alpha
Helix 77	AI5	B	1009	1014	Right-handed alpha
Helix 78	AI6	B	1020	1046	Right-handed alpha
Helix 79	AI7	B	1047	1062	Right-handed alpha

There are 10 sheets in PDB entry 5OOQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	112	124	anti-parallel
Strand 3	A	86	94	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	112	124	anti-parallel
Strand 3	A	314	318	anti-parallel
Strand 4	A	166	170	parallel
Strand 5	A	288	293	parallel
Strand 6	A	256	262	parallel
Strand 7	A	194	199	parallel
Strand 8	A	234	238	parallel
Strand 9	A	219	222	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	342	first strand
Strand 2	A	326	332	anti-parallel
Strand 3	A	553	559	parallel
Strand 4	A	515	518	parallel
Strand 5	A	409	412	parallel
Strand 6	A	498	501	parallel
Strand 7	A	472	475	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	522	524	first strand
Strand 2	A	529	531	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	755	762	first strand
Strand 2	A	717	727	anti-parallel
Strand 3	A	688	700	anti-parallel
Strand 4	A	678	684	anti-parallel
Strand 5	A	767	775	anti-parallel
Strand 6	C	61	63	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	82	first strand
Strand 2	B	112	124	anti-parallel
Strand 3	B	86	94	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	82	first strand
Strand 2	B	112	124	anti-parallel
Strand 3	B	314	318	anti-parallel
Strand 4	B	166	170	parallel
Strand 5	B	288	293	parallel
Strand 6	B	256	262	parallel
Strand 7	B	194	199	parallel
Strand 8	B	234	238	parallel
Strand 9	B	219	222	parallel
Strand 10	B	227	228	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	342	first strand
Strand 2	B	326	332	anti-parallel
Strand 3	B	553	559	parallel
Strand 4	B	515	518	parallel
Strand 5	B	409	412	parallel
Strand 6	B	498	501	parallel
Strand 7	B	472	475	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	522	524	first strand
Strand 2	B	529	531	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	755	763	first strand
Strand 2	B	717	727	anti-parallel
Strand 3	B	688	700	anti-parallel
Strand 4	B	678	684	anti-parallel
Strand 5	B	767	775	anti-parallel
Strand 6	D	61	63	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OOQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OOQ