Analysis of interatomic Contacts of Structural Units in PDB entry:
5OOW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OOW entry

There are 2 chains in PDB entry 5OOW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 186VAL 371
B
 GLY 186VAL 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5OOW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
228 249Right-handed alpha
Helix 2
AA2
A
251 254Right-handed 310
Helix 3
AA3
A
255 276Right-handed alpha
Helix 4
AA4
A
302 316Right-handed alpha
Helix 5
AA5
A
316 328Right-handed alpha
Helix 6
AA6
A
330 334Right-handed 310
Helix 7
AA7
A
341 345Right-handed 310
Helix 8
AA8
A
346 358Right-handed alpha
Helix 9
AA9
A
366 371Right-handed alpha
Helix 10
AB1
B
228 249Right-handed alpha
Helix 11
AB2
B
251 254Right-handed 310
Helix 12
AB3
B
255 276Right-handed alpha
Helix 13
AB4
B
302 316Right-handed alpha
Helix 14
AB5
B
316 328Right-handed alpha
Helix 15
AB6
B
330 334Right-handed 310
Helix 16
AB7
B
341 345Right-handed 310
Helix 17
AB8
B
346 358Right-handed alpha
Helix 18
AB9
B
366 371Right-handed alpha
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There are 4 sheets in PDB entry 5OOW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 224first strand
Strand 2
A
200 207anti-parallel
Strand 3
A
188 195anti-parallel
Strand 4
A
336 340parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 289first strand
Strand 2
A
292 301anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 224first strand
Strand 2
B
200 207anti-parallel
Strand 3
B
188 195anti-parallel
Strand 4
B
336 340parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 289first strand
Strand 2
B
292 301anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il