Analysis of interatomic Contacts of Structural Units in PDB entry:
5OPG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OPG entry

There is 1 chain in PDB entry 5OPG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 21GLU 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5OPG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 55Right-handed 310
Helix 2
AA2
A
114 123Right-handed alpha
Helix 3
AA3
A
149 154Right-handed alpha
Helix 4
AA4
A
221 230Right-handed alpha
Helix 5
AA5
A
236 240Right-handed 310
Helix 6
AA6
A
263 276Right-handed alpha
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There are 6 sheets in PDB entry 5OPG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 29first strand
Strand 2
A
164 172parallel
Strand 3
A
157 161anti-parallel
Strand 4
A
60 61anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
137 147anti-parallel
Strand 3
A
126 133anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
137 147anti-parallel
Strand 3
A
39 45anti-parallel
Strand 4
A
252 253anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 106first strand
Strand 2
A
74 83anti-parallel
Strand 3
A
336 338parallel
Strand 4
A
325 328anti-parallel
Strand 5
A
355 357anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 181first strand
Strand 2
A
184 188anti-parallel
Strand 3
A
359 370anti-parallel
Strand 4
A
202 214anti-parallel
Strand 5
A
243 249anti-parallel
Strand 6
A
256 258anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 300first strand
Strand 2
A
311 317anti-parallel
Strand 3
A
342 344anti-parallel
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