Analysis of interatomic Contacts of Structural Units in PDB entry:
5OPJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OPJ entry

There is 1 chain in PDB entry 5OPJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 23LYS 804
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5OPJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 33Right-handed 310
Helix 2
AA2
A
40 56Right-handed alpha
Helix 3
AA3
A
57 69Right-handed alpha
Helix 4
AA4
A
79 83Right-handed 310
Helix 5
AA5
A
88 106Right-handed alpha
Helix 6
AA6
A
107 129Right-handed alpha
Helix 7
AA7
A
138 148Right-handed alpha
Helix 8
AA8
A
163 183Right-handed alpha
Helix 9
AA9
A
184 203Right-handed alpha
Helix 10
AB1
A
206 214Right-handed alpha
Helix 11
AB2
A
220 233Right-handed alpha
Helix 12
AB3
A
235 244Right-handed alpha
Helix 13
AB4
A
246 255Right-handed alpha
Helix 14
AB5
A
264 282Right-handed alpha
Helix 15
AB6
A
290 310Right-handed alpha
Helix 16
AB7
A
328 334Right-handed alpha
Helix 17
AB8
A
339 356Right-handed alpha
Helix 18
AB9
A
356 361Right-handed alpha
Helix 19
AC1
A
368 381Right-handed alpha
Helix 20
AC2
A
382 386Right-handed 310
Helix 21
AC3
A
415 425Right-handed alpha
Helix 22
AC4
A
426 431Right-handed 310
Helix 23
AC5
A
453 456Right-handed 310
Helix 24
AC6
A
590 594Right-handed 310
Helix 25
AC7
A
600 607Right-handed alpha
Helix 26
AC8
A
639 641Right-handed 310
Helix 27
AC9
A
657 667Right-handed alpha
Helix 28
AD1
A
667 678Right-handed alpha
Helix 29
AD2
A
687 694Right-handed alpha
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There are 7 sheets in PDB entry 5OPJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
448 452anti-parallel
Strand 3
A
457 463anti-parallel
Strand 4
A
470 477anti-parallel
Strand 5
A
531 535anti-parallel
Strand 6
A
500 503anti-parallel
Strand 7
A
506 509anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
161 162anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 436first strand
Strand 2
A
439 442anti-parallel
Strand 3
A
482 489parallel
Strand 4
A
518 525anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
540 544first strand
Strand 2
A
551 556anti-parallel
Strand 3
A
559 566anti-parallel
Strand 4
A
649 653first strand
Strand 5
A
596 598parallel
Strand 6
A
624 625anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
608 610first strand
Strand 2
A
618 620anti-parallel
Strand 3
A
633 637anti-parallel
Strand 4
A
559 566anti-parallel
Strand 5
A
551 556anti-parallel
Strand 6
A
645 647first strand
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
679 683first strand
Strand 2
A
799 803anti-parallel
Strand 3
A
728 736anti-parallel
Strand 4
A
766 777anti-parallel
Strand 5
A
757 758anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
697 706first strand
Strand 2
A
709 724anti-parallel
Strand 3
A
780 788anti-parallel
Strand 4
A
743 747anti-parallel
Strand 5
A
750 751anti-parallel
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