Analysis of interatomic Contacts of Structural Units in PDB entry:
5OPQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OPQ entry

There are 4 chains in PDB entry 5OPQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 35	ASP 693
B	PRO 35	ASP 693
C	PRO 35	ASP 693
D	ILE 36	ASP 693

There are 78 helices in PDB entry 5OPQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	92	94	Right-handed 310
Helix 2	AA2	A	193	204	Right-handed alpha
Helix 3	AA3	A	205	208	Right-handed 310
Helix 4	AA4	A	256	260	Right-handed 310
Helix 5	AA5	A	299	314	Right-handed alpha
Helix 6	AA6	A	319	327	Right-handed alpha
Helix 7	AA7	A	328	333	Right-handed 310
Helix 8	AA8	A	357	371	Right-handed alpha
Helix 9	AA9	A	401	415	Right-handed alpha
Helix 10	AB1	A	459	461	Right-handed 310
Helix 11	AB2	A	462	479	Right-handed alpha
Helix 12	AB3	A	496	510	Right-handed alpha
Helix 13	AB4	A	520	527	Right-handed 310
Helix 14	AB5	A	541	545	Right-handed 310
Helix 15	AB6	A	549	556	Right-handed alpha
Helix 16	AB7	A	577	589	Right-handed alpha
Helix 17	AB8	A	597	599	Right-handed 310
Helix 18	AB9	A	600	623	Right-handed alpha
Helix 19	AC1	A	662	664	Right-handed 310
Helix 20	AC2	B	92	94	Right-handed 310
Helix 21	AC3	B	193	204	Right-handed alpha
Helix 22	AC4	B	205	208	Right-handed 310
Helix 23	AC5	B	256	260	Right-handed 310
Helix 24	AC6	B	299	314	Right-handed alpha
Helix 25	AC7	B	319	327	Right-handed alpha
Helix 26	AC8	B	328	333	Right-handed 310
Helix 27	AC9	B	357	371	Right-handed alpha
Helix 28	AD1	B	401	415	Right-handed alpha
Helix 29	AD2	B	436	440	Right-handed 310
Helix 30	AD3	B	459	469	Right-handed alpha
Helix 31	AD4	B	470	479	Right-handed alpha
Helix 32	AD5	B	496	510	Right-handed alpha
Helix 33	AD6	B	520	527	Right-handed 310
Helix 34	AD7	B	541	545	Right-handed 310
Helix 35	AD8	B	549	556	Right-handed alpha
Helix 36	AD9	B	577	589	Right-handed alpha
Helix 37	AE1	B	597	599	Right-handed 310
Helix 38	AE2	B	600	623	Right-handed alpha
Helix 39	AE3	B	662	664	Right-handed 310
Helix 40	AE4	C	92	94	Right-handed 310
Helix 41	AE5	C	193	204	Right-handed alpha
Helix 42	AE6	C	205	208	Right-handed 310
Helix 43	AE7	C	256	260	Right-handed 310
Helix 44	AE8	C	299	314	Right-handed alpha
Helix 45	AE9	C	319	327	Right-handed alpha
Helix 46	AF1	C	328	333	Right-handed 310
Helix 47	AF2	C	357	371	Right-handed alpha
Helix 48	AF3	C	400	415	Right-handed alpha
Helix 49	AF4	C	459	461	Right-handed 310
Helix 50	AF5	C	462	479	Right-handed alpha
Helix 51	AF6	C	496	510	Right-handed alpha
Helix 52	AF7	C	520	527	Right-handed 310
Helix 53	AF8	C	541	545	Right-handed 310
Helix 54	AF9	C	549	556	Right-handed alpha
Helix 55	AG1	C	577	589	Right-handed alpha
Helix 56	AG2	C	597	599	Right-handed 310
Helix 57	AG3	C	600	623	Right-handed alpha
Helix 58	AG4	D	92	94	Right-handed 310
Helix 59	AG5	D	193	204	Right-handed alpha
Helix 60	AG6	D	205	208	Right-handed 310
Helix 61	AG7	D	256	260	Right-handed 310
Helix 62	AG8	D	299	314	Right-handed alpha
Helix 63	AG9	D	319	327	Right-handed alpha
Helix 64	AH1	D	328	333	Right-handed 310
Helix 65	AH2	D	357	371	Right-handed alpha
Helix 66	AH3	D	401	415	Right-handed alpha
Helix 67	AH4	D	453	457	Right-handed 310
Helix 68	AH5	D	459	461	Right-handed 310
Helix 69	AH6	D	462	469	Right-handed alpha
Helix 70	AH7	D	470	479	Right-handed alpha
Helix 71	AH8	D	496	510	Right-handed alpha
Helix 72	AH9	D	520	527	Right-handed 310
Helix 73	AI1	D	541	545	Right-handed 310
Helix 74	AI2	D	549	556	Right-handed alpha
Helix 75	AI3	D	577	589	Right-handed alpha
Helix 76	AI4	D	597	599	Right-handed 310
Helix 77	AI5	D	600	623	Right-handed alpha
Helix 78	AI6	D	662	664	Right-handed 310

There are 26 sheets in PDB entry 5OPQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	43	47	anti-parallel
Strand 3	A	54	58	anti-parallel
Strand 4	A	64	65	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	90	first strand
Strand 2	A	76	80	anti-parallel
Strand 3	A	154	158	anti-parallel
Strand 4	A	272	280	anti-parallel
Strand 5	A	166	167	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	90	first strand
Strand 2	A	76	80	anti-parallel
Strand 3	A	154	158	anti-parallel
Strand 4	A	272	280	anti-parallel
Strand 5	A	247	254	anti-parallel
Strand 6	A	210	213	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	103	first strand
Strand 2	A	106	112	anti-parallel
Strand 3	A	126	133	anti-parallel
Strand 4	A	139	148	anti-parallel
Strand 5	A	288	296	anti-parallel
Strand 6	A	234	240	anti-parallel
Strand 7	A	226	230	anti-parallel
Strand 8	A	174	177	anti-parallel
Strand 9	A	183	186	anti-parallel
Strand 10	A	546	547	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	560	562	first strand
Strand 2	A	529	531	parallel
Strand 3	A	513	517	parallel
Strand 4	A	482	485	parallel
Strand 5	A	418	423	parallel
Strand 6	A	377	382	parallel
Strand 7	A	337	342	parallel
Strand 8	A	593	596	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	632	first strand
Strand 2	A	639	644	anti-parallel
Strand 3	A	648	653	anti-parallel
Strand 4	A	671	675	anti-parallel
Strand 5	A	681	692	anti-parallel
Strand 6	B	681	692	anti-parallel
Strand 7	B	671	675	anti-parallel
Strand 8	B	648	653	anti-parallel
Strand 9	B	639	644	anti-parallel
Strand 10	B	627	632	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	659	660	first strand
Strand 2	A	666	667	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	39	first strand
Strand 2	B	43	47	anti-parallel
Strand 3	B	54	58	anti-parallel
Strand 4	B	64	65	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	90	first strand
Strand 2	B	76	80	anti-parallel
Strand 3	B	154	158	anti-parallel
Strand 4	B	272	280	anti-parallel
Strand 5	B	166	167	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	90	first strand
Strand 2	B	76	80	anti-parallel
Strand 3	B	154	158	anti-parallel
Strand 4	B	272	280	anti-parallel
Strand 5	B	247	254	anti-parallel
Strand 6	B	210	213	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	103	first strand
Strand 2	B	106	112	anti-parallel
Strand 3	B	126	133	anti-parallel
Strand 4	B	139	148	anti-parallel
Strand 5	B	288	296	anti-parallel
Strand 6	B	234	240	anti-parallel
Strand 7	B	226	230	anti-parallel
Strand 8	B	174	177	anti-parallel
Strand 9	B	183	186	anti-parallel
Strand 10	B	546	547	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	560	562	first strand
Strand 2	B	529	531	parallel
Strand 3	B	513	517	parallel
Strand 4	B	482	485	parallel
Strand 5	B	418	423	parallel
Strand 6	B	377	382	parallel
Strand 7	B	337	342	parallel
Strand 8	B	593	596	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	659	660	first strand
Strand 2	B	666	667	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	39	first strand
Strand 2	C	43	47	anti-parallel
Strand 3	C	54	58	anti-parallel
Strand 4	C	64	65	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	90	first strand
Strand 2	C	76	80	anti-parallel
Strand 3	C	154	158	anti-parallel
Strand 4	C	272	280	anti-parallel
Strand 5	C	166	167	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	90	first strand
Strand 2	C	76	80	anti-parallel
Strand 3	C	154	158	anti-parallel
Strand 4	C	272	280	anti-parallel
Strand 5	C	247	254	anti-parallel
Strand 6	C	210	213	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	103	first strand
Strand 2	C	106	112	anti-parallel
Strand 3	C	126	133	anti-parallel
Strand 4	C	139	148	anti-parallel
Strand 5	C	288	296	anti-parallel
Strand 6	C	234	240	anti-parallel
Strand 7	C	226	230	anti-parallel
Strand 8	C	174	177	anti-parallel
Strand 9	C	183	186	anti-parallel
Strand 10	C	546	547	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	560	562	first strand
Strand 2	C	529	531	parallel
Strand 3	C	513	517	parallel
Strand 4	C	482	485	parallel
Strand 5	C	418	423	parallel
Strand 6	C	377	382	parallel
Strand 7	C	337	342	parallel
Strand 8	C	593	596	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	627	632	first strand
Strand 2	C	639	644	anti-parallel
Strand 3	C	648	653	anti-parallel
Strand 4	C	671	675	anti-parallel
Strand 5	C	681	692	anti-parallel
Strand 6	D	681	692	anti-parallel
Strand 7	D	671	675	anti-parallel
Strand 8	D	648	653	anti-parallel
Strand 9	D	639	644	anti-parallel
Strand 10	D	627	632	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	659	660	first strand
Strand 2	C	666	667	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	39	first strand
Strand 2	D	43	47	anti-parallel
Strand 3	D	54	58	anti-parallel
Strand 4	D	64	65	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	90	first strand
Strand 2	D	76	80	anti-parallel
Strand 3	D	154	158	anti-parallel
Strand 4	D	272	280	anti-parallel
Strand 5	D	166	167	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	90	first strand
Strand 2	D	76	80	anti-parallel
Strand 3	D	154	158	anti-parallel
Strand 4	D	272	280	anti-parallel
Strand 5	D	247	254	anti-parallel
Strand 6	D	210	213	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	103	first strand
Strand 2	D	106	112	anti-parallel
Strand 3	D	126	133	anti-parallel
Strand 4	D	139	148	anti-parallel
Strand 5	D	288	296	anti-parallel
Strand 6	D	234	240	anti-parallel
Strand 7	D	226	230	anti-parallel
Strand 8	D	174	177	anti-parallel
Strand 9	D	183	186	anti-parallel
Strand 10	D	546	547	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	560	562	first strand
Strand 2	D	529	531	parallel
Strand 3	D	513	517	parallel
Strand 4	D	482	485	parallel
Strand 5	D	418	423	parallel
Strand 6	D	377	382	parallel
Strand 7	D	337	342	parallel
Strand 8	D	593	596	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	659	660	first strand
Strand 2	D	666	667	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OPQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OPQ