Analysis of interatomic Contacts of Structural Units in PDB entry:
5OQ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OQ2 entry

There are 2 chains in PDB entry 5OQ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 28SER 387
B
 LYS 30SER 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5OQ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 43Right-handed 310
Helix 2
AA2
A
51 69Right-handed alpha
Helix 3
AA3
A
94 99Right-handed alpha
Helix 4
AA4
A
108 120Right-handed alpha
Helix 5
AA5
A
139 143Right-handed 310
Helix 6
AA6
A
147 152Right-handed alpha
Helix 7
AA7
A
169 187Right-handed alpha
Helix 8
AA8
A
206 214Right-handed alpha
Helix 9
AA9
A
218 242Right-handed alpha
Helix 10
AB1
A
279 286Right-handed alpha
Helix 11
AB2
A
306 319Right-handed alpha
Helix 12
AB3
A
336 340Right-handed 310
Helix 13
AB4
A
344 346Right-handed 310
Helix 14
AB5
A
347 356Right-handed alpha
Helix 15
AB6
A
368 375Right-handed alpha
Helix 16
AB7
A
375 387Right-handed alpha
Helix 17
AB8
B
39 43Right-handed 310
Helix 18
AB9
B
51 69Right-handed alpha
Helix 19
AC1
B
94 98Right-handed 310
Helix 20
AC2
B
108 120Right-handed alpha
Helix 21
AC3
B
139 143Right-handed 310
Helix 22
AC4
B
147 152Right-handed alpha
Helix 23
AC5
B
169 187Right-handed alpha
Helix 24
AC6
B
206 214Right-handed alpha
Helix 25
AC7
B
218 242Right-handed alpha
Helix 26
AC8
B
279 286Right-handed alpha
Helix 27
AC9
B
306 319Right-handed alpha
Helix 28
AD1
B
347 356Right-handed alpha
Helix 29
AD2
B
368 375Right-handed alpha
Helix 30
AD3
B
375 388Right-handed alpha
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There are 4 sheets in PDB entry 5OQ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 296first strand
Strand 2
A
324 329parallel
Strand 3
A
361 366parallel
Strand 4
A
32 37parallel
Strand 5
A
73 79parallel
Strand 6
A
123 128parallel
Strand 7
A
191 194parallel
Strand 8
A
246 249parallel
Strand 9
A
291 292parallel
Strand 10
A
324 329parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 159first strand
Strand 2
A
162 165anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
295 296first strand
Strand 2
B
324 329parallel
Strand 3
B
361 366parallel
Strand 4
B
32 37parallel
Strand 5
B
73 79parallel
Strand 6
B
123 128parallel
Strand 7
B
191 194parallel
Strand 8
B
246 249parallel
Strand 9
B
291 292parallel
Strand 10
B
324 329parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 159first strand
Strand 2
B
162 165anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il