Analysis of interatomic Contacts of Structural Units in PDB entry:
5OQD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OQD entry

There are 6 chains in PDB entry 5OQD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ARG 507	GLU 694
A	ARG 507	PRO 692
C	SER 501	GLU 693
D	HIS 506	GLU 694
E	GLU 504	GLU 693
F	LEU 500	PRO 692

There are 29 helices in PDB entry 5OQD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	576	592	Right-handed alpha
Helix 2	AA2	B	602	611	Right-handed alpha
Helix 3	AA3	B	624	639	Right-handed alpha
Helix 4	AA4	B	678	687	Right-handed alpha
Helix 5	AA5	A	576	590	Right-handed alpha
Helix 6	AA6	A	602	611	Right-handed alpha
Helix 7	AA7	A	617	622	Right-handed alpha
Helix 8	AA8	A	624	639	Right-handed alpha
Helix 9	AA9	A	678	686	Right-handed alpha
Helix 10	AB1	C	576	592	Right-handed alpha
Helix 11	AB2	C	602	610	Right-handed alpha
Helix 12	AB3	C	611	614	Right-handed 310
Helix 13	AB4	C	617	622	Right-handed 310
Helix 14	AB5	C	624	639	Right-handed alpha
Helix 15	AB6	C	678	687	Right-handed alpha
Helix 16	AB7	D	576	593	Right-handed alpha
Helix 17	AB8	D	602	610	Right-handed alpha
Helix 18	AB9	D	617	623	Right-handed 310
Helix 19	AC1	D	624	639	Right-handed alpha
Helix 20	AC2	D	678	686	Right-handed alpha
Helix 21	AC3	E	576	591	Right-handed alpha
Helix 22	AC4	E	602	610	Right-handed alpha
Helix 23	AC5	E	624	639	Right-handed alpha
Helix 24	AC6	E	678	686	Right-handed alpha
Helix 25	AC7	F	576	593	Right-handed alpha
Helix 26	AC8	F	602	610	Right-handed alpha
Helix 27	AC9	F	617	623	Right-handed alpha
Helix 28	AD1	F	627	639	Right-handed alpha
Helix 29	AD2	F	678	686	Right-handed alpha

There are 19 sheets in PDB entry 5OQD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	511	first strand
Strand 2	A	643	648	anti-parallel
Strand 3	A	655	658	anti-parallel
Strand 4	A	597	598	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	513	514	first strand
Strand 2	B	520	521	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	527	529	first strand
Strand 2	B	536	538	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	556	559	first strand
Strand 2	B	569	573	anti-parallel
Strand 3	B	690	691	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	597	598	first strand
Strand 2	B	653	658	anti-parallel
Strand 3	B	643	647	anti-parallel
Strand 4	A	509	511	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	527	529	first strand
Strand 2	A	536	538	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	556	559	first strand
Strand 2	A	569	572	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	527	529	first strand
Strand 2	C	536	538	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	556	559	first strand
Strand 2	C	569	572	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	597	598	first strand
Strand 2	C	655	658	anti-parallel
Strand 3	C	643	646	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	527	529	first strand
Strand 2	D	536	538	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	556	559	first strand
Strand 2	D	569	572	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	597	598	first strand
Strand 2	D	655	658	anti-parallel
Strand 3	D	643	646	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	527	529	first strand
Strand 2	E	536	538	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	556	559	first strand
Strand 2	E	569	572	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	597	598	first strand
Strand 2	E	655	658	anti-parallel
Strand 3	E	643	646	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	527	529	first strand
Strand 2	F	536	538	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	556	559	first strand
Strand 2	F	569	572	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	597	598	first strand
Strand 2	F	655	658	anti-parallel
Strand 3	F	643	646	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OQD

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OQD