Analysis of interatomic Contacts of Structural Units in PDB entry:
5OQG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OQG entry

There are 2 chains in PDB entry 5OQG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	PRO 418
B	SER 1	PRO 418

There are 12 helices in PDB entry 5OQG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	191	195	Right-handed 310
Helix 2	AA2	A	198	227	Right-handed alpha
Helix 3	AA3	A	281	293	Right-handed alpha
Helix 4	AA4	A	293	304	Right-handed alpha
Helix 5	AA5	A	304	317	Right-handed alpha
Helix 6	AA6	A	395	397	Right-handed 310
Helix 7	AA7	B	191	197	Right-handed 310
Helix 8	AA8	B	198	227	Right-handed alpha
Helix 9	AA9	B	279	293	Right-handed alpha
Helix 10	AB1	B	293	304	Right-handed alpha
Helix 11	AB2	B	304	322	Right-handed alpha
Helix 12	AB3	B	395	397	Right-handed 310

There are 14 sheets in PDB entry 5OQG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	34	first strand
Strand 2	A	44	53	anti-parallel
Strand 3	A	85	93	anti-parallel
Strand 4	A	73	74	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	34	first strand
Strand 2	A	44	53	anti-parallel
Strand 3	A	85	93	anti-parallel
Strand 4	A	78	79	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	68	first strand
Strand 2	A	59	64	anti-parallel
Strand 3	A	101	106	anti-parallel
Strand 4	A	114	117	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	189	first strand
Strand 2	A	173	179	anti-parallel
Strand 3	A	163	170	anti-parallel
Strand 4	A	145	154	anti-parallel
Strand 5	A	236	245	anti-parallel
Strand 6	A	251	260	anti-parallel
Strand 7	A	263	268	anti-parallel
Strand 8	A	275	277	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	335	first strand
Strand 2	A	340	350	anti-parallel
Strand 3	A	383	392	anti-parallel
Strand 4	A	371	372	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	335	first strand
Strand 2	A	340	350	anti-parallel
Strand 3	A	383	392	anti-parallel
Strand 4	A	376	377	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	365	first strand
Strand 2	A	356	361	anti-parallel
Strand 3	A	399	404	anti-parallel
Strand 4	A	412	414	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	34	first strand
Strand 2	B	44	53	anti-parallel
Strand 3	B	85	93	anti-parallel
Strand 4	B	73	74	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	34	first strand
Strand 2	B	44	53	anti-parallel
Strand 3	B	85	93	anti-parallel
Strand 4	B	78	79	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	68	first strand
Strand 2	B	59	64	anti-parallel
Strand 3	B	101	106	anti-parallel
Strand 4	B	114	117	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	189	first strand
Strand 2	B	173	179	anti-parallel
Strand 3	B	163	170	anti-parallel
Strand 4	B	145	154	anti-parallel
Strand 5	B	236	245	anti-parallel
Strand 6	B	251	260	anti-parallel
Strand 7	B	263	268	anti-parallel
Strand 8	B	275	277	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	335	first strand
Strand 2	B	340	350	anti-parallel
Strand 3	B	383	392	anti-parallel
Strand 4	B	371	372	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	335	first strand
Strand 2	B	340	350	anti-parallel
Strand 3	B	383	392	anti-parallel
Strand 4	B	376	377	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	365	first strand
Strand 2	B	356	361	anti-parallel
Strand 3	B	399	404	anti-parallel
Strand 4	B	412	414	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OQG

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OQG