Analysis of interatomic Contacts of Structural Units in PDB entry:
5OQO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OQO entry

There are 4 chains in PDB entry 5OQO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 7SER 911
B
 MET 383SER 524
C
 G 1 C 18
D
 G 1 C 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 5OQO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 25Right-handed alpha
Helix 2
AA2
A
30 48Right-handed alpha
Helix 3
AA3
A
50 63Right-handed alpha
Helix 4
AA4
A
64 66Right-handed 310
Helix 5
AA5
A
72 99Right-handed alpha
Helix 6
AA6
A
106 124Right-handed alpha
Helix 7
AA7
A
130 145Right-handed alpha
Helix 8
AA8
A
152 167Right-handed alpha
Helix 9
AA9
A
171 185Right-handed alpha
Helix 10
AB1
A
206 217Right-handed alpha
Helix 11
AB2
A
219 229Right-handed alpha
Helix 12
AB3
A
236 243Right-handed alpha
Helix 13
AB4
A
244 246Right-handed 310
Helix 14
AB5
A
248 258Right-handed alpha
Helix 15
AB6
A
258 264Right-handed alpha
Helix 16
AB7
A
265 270Right-handed alpha
Helix 17
AB8
A
272 286Right-handed alpha
Helix 18
AB9
A
288 301Right-handed alpha
Helix 19
AC1
A
301 307Right-handed alpha
Helix 20
AC2
A
310 318Right-handed alpha
Helix 21
AC3
A
325 337Right-handed alpha
Helix 22
AC4
A
337 342Right-handed alpha
Helix 23
AC5
A
355 373Right-handed alpha
Helix 24
AC6
A
374 381Right-handed alpha
Helix 25
AC7
A
384 401Right-handed alpha
Helix 26
AC8
A
411 430Right-handed alpha
Helix 27
AC9
A
436 452Right-handed alpha
Helix 28
AD1
A
457 473Right-handed alpha
Helix 29
AD2
A
474 497Right-handed alpha
Helix 30
AD3
A
571 588Right-handed alpha
Helix 31
AD4
A
596 612Right-handed alpha
Helix 32
AD5
A
615 631Right-handed alpha
Helix 33
AD6
A
633 639Right-handed alpha
Helix 34
AD7
A
640 651Right-handed alpha
Helix 35
AD8
A
652 671Right-handed alpha
Helix 36
AD9
A
682 696Right-handed alpha
Helix 37
AE1
A
699 716Right-handed alpha
Helix 38
AE2
A
721 734Right-handed alpha
Helix 39
AE3
A
736 739Right-handed 310
Helix 40
AE4
A
740 758Right-handed alpha
Helix 41
AE5
A
758 786Right-handed alpha
Helix 42
AE6
A
798 811Right-handed alpha
Helix 43
AE7
A
812 815Right-handed 310
Helix 44
AE8
A
820 825Right-handed 310
Helix 45
AE9
A
826 840Right-handed alpha
Helix 46
AF1
A
844 853Right-handed alpha
Helix 47
AF2
A
854 858Right-handed 310
Helix 48
AF3
A
865 883Right-handed alpha
Helix 49
AF4
A
886 908Right-handed alpha
Helix 50
AF5
B
384 398Right-handed alpha
Helix 51
AF6
B
404 409Right-handed 310
Helix 52
AF7
B
468 475Right-handed alpha
Helix 53
AF8
B
505 511Right-handed alpha
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There are no sheets in PDB entry 5OQO
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il