Analysis of interatomic Contacts of Structural Units in PDB entry:
5OR4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OR4 entry

There are 4 chains in PDB entry 5OR4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 5	LEU 383
B	THR 5	LEU 383
C	LEU 6	LEU 383
D	THR 5	LEU 383

There are 70 helices in PDB entry 5OR4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	37	Right-handed alpha
Helix 2	AA2	A	59	61	Right-handed 310
Helix 3	AA3	A	62	77	Right-handed alpha
Helix 4	AA4	A	93	106	Right-handed alpha
Helix 5	AA5	A	107	109	Right-handed 310
Helix 6	AA6	A	114	135	Right-handed alpha
Helix 7	AA7	A	144	149	Right-handed alpha
Helix 8	AA8	A	151	155	Right-handed 310
Helix 9	AA9	A	242	250	Right-handed alpha
Helix 10	AB1	A	251	262	Right-handed alpha
Helix 11	AB2	A	264	274	Right-handed alpha
Helix 12	AB3	A	281	290	Right-handed alpha
Helix 13	AB4	A	292	297	Right-handed alpha
Helix 14	AB5	A	301	306	Right-handed 310
Helix 15	AB6	A	307	325	Right-handed alpha
Helix 16	AB7	A	326	331	Right-handed alpha
Helix 17	AB8	A	339	343	Right-handed 310
Helix 18	AB9	A	368	370	Right-handed 310
Helix 19	AC1	B	13	36	Right-handed alpha
Helix 20	AC2	B	59	61	Right-handed 310
Helix 21	AC3	B	62	77	Right-handed alpha
Helix 22	AC4	B	93	110	Right-handed alpha
Helix 23	AC5	B	114	134	Right-handed alpha
Helix 24	AC6	B	144	148	Right-handed 310
Helix 25	AC7	B	151	155	Right-handed 310
Helix 26	AC8	B	242	250	Right-handed alpha
Helix 27	AC9	B	251	261	Right-handed alpha
Helix 28	AD1	B	264	274	Right-handed alpha
Helix 29	AD2	B	281	290	Right-handed alpha
Helix 30	AD3	B	292	297	Right-handed alpha
Helix 31	AD4	B	301	306	Right-handed 310
Helix 32	AD5	B	307	325	Right-handed alpha
Helix 33	AD6	B	326	331	Right-handed alpha
Helix 34	AD7	B	339	343	Right-handed 310
Helix 35	AD8	B	368	371	Right-handed 310
Helix 36	AD9	C	13	36	Right-handed alpha
Helix 37	AE1	C	59	61	Right-handed 310
Helix 38	AE2	C	62	77	Right-handed alpha
Helix 39	AE3	C	84	88	Right-handed 310
Helix 40	AE4	C	93	106	Right-handed alpha
Helix 41	AE5	C	107	109	Right-handed 310
Helix 42	AE6	C	114	134	Right-handed alpha
Helix 43	AE7	C	144	149	Right-handed 310
Helix 44	AE8	C	151	155	Right-handed 310
Helix 45	AE9	C	242	250	Right-handed alpha
Helix 46	AF1	C	251	261	Right-handed alpha
Helix 47	AF2	C	264	274	Right-handed alpha
Helix 48	AF3	C	281	290	Right-handed alpha
Helix 49	AF4	C	292	297	Right-handed alpha
Helix 50	AF5	C	301	306	Right-handed 310
Helix 51	AF6	C	307	326	Right-handed alpha
Helix 52	AF7	C	326	331	Right-handed alpha
Helix 53	AF8	C	339	343	Right-handed 310
Helix 54	AF9	C	368	371	Right-handed 310
Helix 55	AG1	D	13	36	Right-handed alpha
Helix 56	AG2	D	64	77	Right-handed alpha
Helix 57	AG3	D	93	105	Right-handed alpha
Helix 58	AG4	D	114	134	Right-handed alpha
Helix 59	AG5	D	145	149	Right-handed 310
Helix 60	AG6	D	151	155	Right-handed 310
Helix 61	AG7	D	242	250	Right-handed alpha
Helix 62	AG8	D	251	261	Right-handed alpha
Helix 63	AG9	D	264	274	Right-handed alpha
Helix 64	AH1	D	281	290	Right-handed alpha
Helix 65	AH2	D	292	297	Right-handed alpha
Helix 66	AH3	D	301	306	Right-handed 310
Helix 67	AH4	D	307	325	Right-handed alpha
Helix 68	AH5	D	326	331	Right-handed alpha
Helix 69	AH6	D	339	343	Right-handed 310
Helix 70	AH7	D	368	371	Right-handed 310

There are 22 sheets in PDB entry 5OR4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	142	first strand
Strand 2	A	53	57	parallel
Strand 3	A	380	383	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	171	first strand
Strand 2	A	196	199	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	180	first strand
Strand 2	A	188	190	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	217	first strand
Strand 2	A	223	224	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	355	first strand
Strand 2	A	365	366	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	142	first strand
Strand 2	B	53	57	parallel
Strand 3	B	380	383	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	171	first strand
Strand 2	B	196	199	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	180	first strand
Strand 2	B	188	190	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	209	first strand
Strand 2	B	235	236	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	217	first strand
Strand 2	B	223	224	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	355	first strand
Strand 2	B	365	366	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	53	57	parallel
Strand 3	C	380	382	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	180	first strand
Strand 2	C	188	190	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	209	first strand
Strand 2	C	235	236	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	217	first strand
Strand 2	C	223	224	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	355	first strand
Strand 2	C	365	366	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	142	first strand
Strand 2	D	53	57	parallel
Strand 3	D	380	383	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	171	first strand
Strand 2	D	196	199	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	180	first strand
Strand 2	D	188	190	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	209	first strand
Strand 2	D	235	236	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	217	first strand
Strand 2	D	223	224	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	355	first strand
Strand 2	D	365	366	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OR4

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OR4