Analysis of interatomic Contacts of Structural Units in PDB entry:
5ORG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ORG entry

There are 2 chains in PDB entry 5ORG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 20GLN 276
B
 LYS 23PRO 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5ORG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 60Right-handed alpha
Helix 2
AA2
A
73 80Right-handed alpha
Helix 3
AA3
A
93 98Right-handed alpha
Helix 4
AA4
A
119 124Right-handed 310
Helix 5
AA5
A
136 151Right-handed alpha
Helix 6
AA6
A
162 172Right-handed alpha
Helix 7
AA7
A
183 193Right-handed alpha
Helix 8
AA8
A
203 211Right-handed alpha
Helix 9
AA9
A
212 216Right-handed 310
Helix 10
AB1
A
241 258Right-handed alpha
Helix 11
AB2
A
259 270Right-handed alpha
Helix 12
AB3
B
47 60Right-handed alpha
Helix 13
AB4
B
73 80Right-handed alpha
Helix 14
AB5
B
93 98Right-handed alpha
Helix 15
AB6
B
119 124Right-handed 310
Helix 16
AB7
B
136 151Right-handed alpha
Helix 17
AB8
B
162 172Right-handed alpha
Helix 18
AB9
B
183 193Right-handed alpha
Helix 19
AC1
B
203 211Right-handed alpha
Helix 20
AC2
B
212 216Right-handed 310
Helix 21
AC3
B
241 258Right-handed alpha
Helix 22
AC4
B
259 270Right-handed alpha
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There are 8 sheets in PDB entry 5ORG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 68first strand
Strand 2
A
23 29parallel
Strand 3
A
85 86parallel
Strand 4
A
236 237anti-parallel
Strand 5
A
101 102anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
45 46anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
232 233anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
218 226parallel
Strand 3
A
111 116anti-parallel
Strand 4
A
198 202anti-parallel
Strand 5
A
155 159parallel
Strand 6
A
177 181parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 68first strand
Strand 2
B
24 29parallel
Strand 3
B
85 86parallel
Strand 4
B
236 237anti-parallel
Strand 5
B
101 102anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 39first strand
Strand 2
B
45 46anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 108first strand
Strand 2
B
232 233anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 132first strand
Strand 2
B
218 226parallel
Strand 3
B
111 116anti-parallel
Strand 4
B
198 202anti-parallel
Strand 5
B
155 159parallel
Strand 6
B
177 181parallel
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