Analysis of interatomic Contacts of Structural Units in PDB entry:
5OSH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OSH entry

There are 12 chains in PDB entry 5OSH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PRO 182
B	GLU 482	ARG 780
C	TYR 6	PRO 222
D	MET 1	PRO 182
E	GLU 487	ARG 780
F	MET 9	PRO 222
G	MET 1	PRO 182
H	GLN 488	LEU 777
I	MET 1	GLU 223
J	MET 1	PRO 182
K	GLN 488	ARG 780
L	TYR 6	SER 220

There are118 helices in PDB entry 5OSH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	26	Right-handed alpha
Helix 2	AA2	A	42	52	Right-handed alpha
Helix 3	AA3	A	95	107	Right-handed alpha
Helix 4	AA4	B	485	498	Right-handed alpha
Helix 5	AA5	B	502	518	Right-handed alpha
Helix 6	AA6	B	524	546	Right-handed alpha
Helix 7	AA7	B	552	573	Right-handed alpha
Helix 8	AA8	B	577	595	Right-handed alpha
Helix 9	AA9	B	599	618	Right-handed alpha
Helix 10	AB1	B	620	638	Right-handed alpha
Helix 11	AB2	B	642	659	Right-handed alpha
Helix 12	AB3	B	662	673	Right-handed alpha
Helix 13	AB4	B	674	678	Right-handed 310
Helix 14	AB5	B	692	709	Right-handed alpha
Helix 15	AB6	B	712	733	Right-handed alpha
Helix 16	AB7	B	739	754	Right-handed alpha
Helix 17	AB8	B	755	757	Right-handed 310
Helix 18	AB9	B	760	780	Right-handed alpha
Helix 19	AC1	C	11	27	Right-handed alpha
Helix 20	AC2	C	29	46	Right-handed alpha
Helix 21	AC3	C	50	61	Right-handed alpha
Helix 22	AC4	C	61	66	Right-handed alpha
Helix 23	AC5	C	84	90	Right-handed alpha
Helix 24	AC6	C	103	121	Right-handed alpha
Helix 25	AC7	C	124	134	Right-handed alpha
Helix 26	AC8	C	135	146	Right-handed alpha
Helix 27	AC9	C	183	204	Right-handed alpha
Helix 28	AD1	C	210	220	Right-handed alpha
Helix 29	AD2	D	19	26	Right-handed alpha
Helix 30	AD3	D	42	53	Right-handed alpha
Helix 31	AD4	D	95	107	Right-handed alpha
Helix 32	AD5	E	490	492	Right-handed 310
Helix 33	AD6	E	493	499	Right-handed alpha
Helix 34	AD7	E	502	518	Right-handed alpha
Helix 35	AD8	E	524	527	Right-handed 310
Helix 36	AD9	E	528	546	Right-handed alpha
Helix 37	AE1	E	552	573	Right-handed alpha
Helix 38	AE2	E	577	595	Right-handed alpha
Helix 39	AE3	E	598	618	Right-handed alpha
Helix 40	AE4	E	620	638	Right-handed alpha
Helix 41	AE5	E	642	660	Right-handed alpha
Helix 42	AE6	E	662	674	Right-handed alpha
Helix 43	AE7	E	675	680	Right-handed alpha
Helix 44	AE8	E	692	707	Right-handed alpha
Helix 45	AE9	E	712	733	Right-handed alpha
Helix 46	AF1	E	739	752	Right-handed alpha
Helix 47	AF2	E	760	777	Right-handed alpha
Helix 48	AF3	F	11	29	Right-handed alpha
Helix 49	AF4	F	29	45	Right-handed alpha
Helix 50	AF5	F	50	60	Right-handed alpha
Helix 51	AF6	F	61	69	Right-handed alpha
Helix 52	AF7	F	70	73	Right-handed 310
Helix 53	AF8	F	84	90	Right-handed alpha
Helix 54	AF9	F	103	121	Right-handed alpha
Helix 55	AG1	F	124	134	Right-handed alpha
Helix 56	AG2	F	135	146	Right-handed alpha
Helix 57	AG3	F	183	203	Right-handed alpha
Helix 58	AG4	F	212	220	Right-handed alpha
Helix 59	AG5	G	19	26	Right-handed alpha
Helix 60	AG6	G	43	51	Right-handed alpha
Helix 61	AG7	G	95	107	Right-handed alpha
Helix 62	AG8	H	493	499	Right-handed alpha
Helix 63	AG9	H	502	518	Right-handed alpha
Helix 64	AH1	H	524	546	Right-handed alpha
Helix 65	AH2	H	552	571	Right-handed alpha
Helix 66	AH3	H	572	575	Right-handed 310
Helix 67	AH4	H	577	595	Right-handed alpha
Helix 68	AH5	H	598	618	Right-handed alpha
Helix 69	AH6	H	620	638	Right-handed alpha
Helix 70	AH7	H	642	659	Right-handed alpha
Helix 71	AH8	H	662	678	Right-handed alpha
Helix 72	AH9	H	692	709	Right-handed alpha
Helix 73	AI1	H	712	732	Right-handed alpha
Helix 74	AI2	H	739	754	Right-handed alpha
Helix 75	AI3	H	760	776	Right-handed alpha
Helix 76	AI4	I	12	26	Right-handed alpha
Helix 77	AI5	I	29	46	Right-handed alpha
Helix 78	AI6	I	50	60	Right-handed alpha
Helix 79	AI7	I	61	66	Right-handed alpha
Helix 80	AI8	I	69	74	Right-handed alpha
Helix 81	AI9	I	85	90	Right-handed alpha
Helix 82	AJ1	I	105	122	Right-handed alpha
Helix 83	AJ2	I	124	134	Right-handed alpha
Helix 84	AJ3	I	135	146	Right-handed alpha
Helix 85	AJ4	I	183	204	Right-handed alpha
Helix 86	AJ5	I	210	220	Right-handed alpha
Helix 87	AJ6	J	19	26	Right-handed alpha
Helix 88	AJ7	J	42	53	Right-handed alpha
Helix 89	AJ8	J	95	107	Right-handed alpha
Helix 90	AJ9	K	490	493	Right-handed 310
Helix 91	AK1	K	494	499	Right-handed alpha
Helix 92	AK2	K	502	517	Right-handed alpha
Helix 93	AK3	K	524	529	Right-handed alpha
Helix 94	AK4	K	529	545	Right-handed alpha
Helix 95	AK5	K	554	573	Right-handed alpha
Helix 96	AK6	K	577	595	Right-handed alpha
Helix 97	AK7	K	598	618	Right-handed alpha
Helix 98	AK8	K	621	638	Right-handed alpha
Helix 99	AK9	K	642	651	Right-handed alpha
Helix 100	AL1	K	652	659	Right-handed alpha
Helix 101	AL2	K	662	670	Right-handed alpha
Helix 102	AL3	K	673	678	Right-handed alpha
Helix 103	AL4	K	692	710	Right-handed alpha
Helix 104	AL5	K	712	732	Right-handed alpha
Helix 105	AL6	K	739	752	Right-handed alpha
Helix 106	AL7	K	761	765	Right-handed 310
Helix 107	AL8	K	769	774	Right-handed alpha
Helix 108	AL9	L	11	26	Right-handed alpha
Helix 109	AM1	L	30	46	Right-handed alpha
Helix 110	AM2	L	50	59	Right-handed alpha
Helix 111	AM3	L	60	62	Right-handed 310
Helix 112	AM4	L	87	91	Right-handed 310
Helix 113	AM5	L	103	121	Right-handed alpha
Helix 114	AM6	L	124	134	Right-handed alpha
Helix 115	AM7	L	135	147	Right-handed alpha
Helix 116	AM8	L	183	203	Right-handed alpha
Helix 117	AM9	L	204	209	Right-handed alpha
Helix 118	AN1	L	212	217	Right-handed alpha

There are 11 sheets in PDB entry 5OSH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	31	36	parallel
Strand 3	A	2	6	parallel
Strand 4	A	149	155	anti-parallel
Strand 5	A	160	168	anti-parallel
Strand 6	A	171	179	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	77	first strand
Strand 2	A	80	85	anti-parallel
Strand 3	A	110	112	parallel
Strand 4	A	128	131	parallel
Strand 5	A	120	123	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	166	first strand
Strand 2	C	174	175	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	57	first strand
Strand 2	D	33	36	parallel
Strand 3	D	2	6	parallel
Strand 4	D	149	154	anti-parallel
Strand 5	D	160	168	anti-parallel
Strand 6	D	171	179	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	77	first strand
Strand 2	D	80	84	anti-parallel
Strand 3	D	110	112	parallel
Strand 4	D	127	131	parallel
Strand 5	D	120	124	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	165	166	first strand
Strand 2	F	174	175	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	55	58	first strand
Strand 2	G	33	36	parallel
Strand 3	G	2	6	parallel
Strand 4	G	150	155	anti-parallel
Strand 5	G	159	165	anti-parallel
Strand 6	G	174	180	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	73	76	first strand
Strand 2	G	81	84	anti-parallel
Strand 3	G	110	112	parallel
Strand 4	G	128	131	parallel
Strand 5	G	120	123	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	165	166	first strand
Strand 2	I	174	175	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	55	57	first strand
Strand 2	J	33	36	parallel
Strand 3	J	2	6	parallel
Strand 4	J	149	155	anti-parallel
Strand 5	J	160	167	anti-parallel
Strand 6	J	172	179	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	73	77	first strand
Strand 2	J	80	84	anti-parallel
Strand 3	J	110	112	parallel
Strand 4	J	127	131	parallel
Strand 5	J	120	124	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OSH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OSH