Analysis of interatomic Contacts of Structural Units in PDB entry:
5OT1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OT1 entry

There is 1 chain in PDB entry 5OT1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 185ARG 764
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5OT1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
285 290Right-handed alpha
Helix 2
AA2
A
297 301Right-handed 310
Helix 3
AA3
A
305 313Right-handed 310
Helix 4
AA4
A
316 321Right-handed alpha
Helix 5
AA5
A
350 356Right-handed alpha
Helix 6
AA6
A
357 364Right-handed alpha
Helix 7
AA7
A
397 411Right-handed alpha
Helix 8
AA8
A
428 436Right-handed alpha
Helix 9
AA9
A
437 447Right-handed 310
Helix 10
AB1
A
464 468Right-handed 310
Helix 11
AB2
A
478 496Right-handed alpha
Helix 12
AB3
A
504 508Right-handed 310
Helix 13
AB4
A
510 526Right-handed alpha
Helix 14
AB5
A
539 543Right-handed 310
Helix 15
AB6
A
553 558Right-handed alpha
Helix 16
AB7
A
560 566Right-handed alpha
Helix 17
AB8
A
570 585Right-handed alpha
Helix 18
AB9
A
586 592Right-handed alpha
Helix 19
AC1
A
604 609Right-handed alpha
Helix 20
AC2
A
619 634Right-handed alpha
Helix 21
AC3
A
645 649Right-handed 310
Helix 22
AC4
A
658 662Right-handed 310
Helix 23
AC5
A
670 687Right-handed alpha
Helix 24
AC6
A
687 692Right-handed alpha
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There are 7 sheets in PDB entry 5OT1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
202 209anti-parallel
Strand 3
A
238 245anti-parallel
Strand 4
A
224 233anti-parallel
Strand 5
A
214 221anti-parallel
Strand 6
A
249 257anti-parallel
Strand 7
A
263 265anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 199first strand
Strand 2
A
202 209anti-parallel
Strand 3
A
238 245anti-parallel
Strand 4
A
224 233anti-parallel
Strand 5
A
214 221anti-parallel
Strand 6
A
249 257anti-parallel
Strand 7
A
274 276anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 551first strand
Strand 2
A
530 533parallel
Strand 3
A
499 502parallel
Strand 4
A
414 419parallel
Strand 5
A
366 371parallel
Strand 6
A
292 296parallel
Strand 7
A
639 643parallel
Strand 8
A
594 595parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
A
345 346parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 377first strand
Strand 2
A
385 391anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
695 697first strand
Strand 2
A
704 709anti-parallel
Strand 3
A
715 720anti-parallel
Strand 4
A
758 763anti-parallel
Strand 5
A
736 737anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
728 729first strand
Strand 2
A
751 752anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il