Analysis of interatomic Contacts of Structural Units in PDB entry:
5OT4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OT4 entry

There are 4 chains in PDB entry 5OT4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 6ALA 863
B
 MET 1VAL 859
C
 MET 1LYS 857
D
 SER 0ASP 860
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are196 helices in PDB entry 5OT4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 26Right-handed alpha
Helix 2
AA2
A
29 46Right-handed alpha
Helix 3
AA3
A
50 60Right-handed alpha
Helix 4
AA4
A
61 69Right-handed alpha
Helix 5
AA5
A
103 121Right-handed alpha
Helix 6
AA6
A
124 134Right-handed alpha
Helix 7
AA7
A
135 146Right-handed alpha
Helix 8
AA8
A
183 206Right-handed alpha
Helix 9
AA9
A
208 218Right-handed alpha
Helix 10
AB1
A
220 232Right-handed alpha
Helix 11
AB2
A
237 241Right-handed 310
Helix 12
AB3
A
244 273Right-handed alpha
Helix 13
AB4
A
275 282Right-handed alpha
Helix 14
AB5
A
282 287Right-handed alpha
Helix 15
AB6
A
290 297Right-handed alpha
Helix 16
AB7
A
299 306Right-handed alpha
Helix 17
AB8
A
310 329Right-handed alpha
Helix 18
AB9
A
334 339Right-handed alpha
Helix 19
AC1
A
342 351Right-handed alpha
Helix 20
AC2
A
359 365Right-handed 310
Helix 21
AC3
A
369 385Right-handed alpha
Helix 22
AC4
A
393 404Right-handed alpha
Helix 23
AC5
A
406 417Right-handed alpha
Helix 24
AC6
A
429 450Right-handed alpha
Helix 25
AC7
A
454 456Right-handed 310
Helix 26
AC8
A
457 466Right-handed alpha
Helix 27
AC9
A
468 478Right-handed alpha
Helix 28
AD1
A
479 487Right-handed alpha
Helix 29
AD2
A
490 498Right-handed alpha
Helix 30
AD3
A
504 520Right-handed alpha
Helix 31
AD4
A
523 532Right-handed alpha
Helix 32
AD5
A
540 557Right-handed alpha
Helix 33
AD6
A
563 579Right-handed alpha
Helix 34
AD7
A
582 590Right-handed alpha
Helix 35
AD8
A
603 614Right-handed alpha
Helix 36
AD9
A
617 626Right-handed alpha
Helix 37
AE1
A
630 640Right-handed alpha
Helix 38
AE2
A
648 657Right-handed alpha
Helix 39
AE3
A
664 674Right-handed alpha
Helix 40
AE4
A
679 693Right-handed alpha
Helix 41
AE5
A
694 712Right-handed alpha
Helix 42
AE6
A
714 742Right-handed alpha
Helix 43
AE7
A
742 751Right-handed alpha
Helix 44
AE8
A
765 805Right-handed alpha
Helix 45
AE9
A
819 863Right-handed alpha
Helix 46
AF1
B
11 26Right-handed alpha
Helix 47
AF2
B
29 46Right-handed alpha
Helix 48
AF3
B
50 60Right-handed alpha
Helix 49
AF4
B
61 69Right-handed alpha
Helix 50
AF5
B
70 74Right-handed 310
Helix 51
AF6
B
84 91Right-handed alpha
Helix 52
AF7
B
103 121Right-handed alpha
Helix 53
AF8
B
124 134Right-handed alpha
Helix 54
AF9
B
135 146Right-handed alpha
Helix 55
AG1
B
183 206Right-handed alpha
Helix 56
AG2
B
208 217Right-handed alpha
Helix 57
AG3
B
220 231Right-handed alpha
Helix 58
AG4
B
234 241Right-handed 310
Helix 59
AG5
B
244 266Right-handed alpha
Helix 60
AG6
B
266 272Right-handed alpha
Helix 61
AG7
B
275 282Right-handed alpha
Helix 62
AG8
B
282 288Right-handed alpha
Helix 63
AG9
B
290 298Right-handed alpha
Helix 64
AH1
B
299 304Right-handed alpha
Helix 65
AH2
B
307 309Right-handed 310
Helix 66
AH3
B
310 329Right-handed alpha
Helix 67
AH4
B
334 340Right-handed alpha
Helix 68
AH5
B
342 352Right-handed alpha
Helix 69
AH6
B
360 364Right-handed 310
Helix 70
AH7
B
369 385Right-handed alpha
Helix 71
AH8
B
393 404Right-handed alpha
Helix 72
AH9
B
406 417Right-handed alpha
Helix 73
AI1
B
428 450Right-handed alpha
Helix 74
AI2
B
454 456Right-handed 310
Helix 75
AI3
B
457 466Right-handed alpha
Helix 76
AI4
B
468 478Right-handed alpha
Helix 77
AI5
B
479 486Right-handed alpha
Helix 78
AI6
B
490 499Right-handed alpha
Helix 79
AI7
B
504 519Right-handed alpha
Helix 80
AI8
B
523 532Right-handed alpha
Helix 81
AI9
B
540 556Right-handed alpha
Helix 82
AJ1
B
563 579Right-handed alpha
Helix 83
AJ2
B
582 590Right-handed alpha
Helix 84
AJ3
B
603 626Right-handed alpha
Helix 85
AJ4
B
628 641Right-handed alpha
Helix 86
AJ5
B
648 657Right-handed alpha
Helix 87
AJ6
B
664 674Right-handed alpha
Helix 88
AJ7
B
679 693Right-handed alpha
Helix 89
AJ8
B
694 711Right-handed alpha
Helix 90
AJ9
B
714 742Right-handed alpha
Helix 91
AK1
B
742 751Right-handed alpha
Helix 92
AK2
B
769 772Right-handed 310
Helix 93
AK3
B
773 805Right-handed alpha
Helix 94
AK4
B
819 858Right-handed alpha
Helix 95
AK5
C
12 26Right-handed alpha
Helix 96
AK6
C
30 46Right-handed alpha
Helix 97
AK7
C
50 60Right-handed alpha
Helix 98
AK8
C
61 69Right-handed alpha
Helix 99
AK9
C
70 74Right-handed 310
Helix 100
AL1
C
84 90Right-handed alpha
Helix 101
AL2
C
103 121Right-handed alpha
Helix 102
AL3
C
124 132Right-handed alpha
Helix 103
AL4
C
135 146Right-handed alpha
Helix 104
AL5
C
183 206Right-handed alpha
Helix 105
AL6
C
208 218Right-handed alpha
Helix 106
AL7
C
220 231Right-handed alpha
Helix 107
AL8
C
236 241Right-handed 310
Helix 108
AL9
C
244 274Right-handed alpha
Helix 109
AM1
C
275 282Right-handed alpha
Helix 110
AM2
C
282 287Right-handed alpha
Helix 111
AM3
C
290 295Right-handed alpha
Helix 112
AM4
C
300 306Right-handed alpha
Helix 113
AM5
C
307 309Right-handed 310
Helix 114
AM6
C
310 329Right-handed alpha
Helix 115
AM7
C
334 339Right-handed alpha
Helix 116
AM8
C
342 351Right-handed alpha
Helix 117
AM9
C
359 364Right-handed 310
Helix 118
AN1
C
369 384Right-handed alpha
Helix 119
AN2
C
393 404Right-handed alpha
Helix 120
AN3
C
406 418Right-handed alpha
Helix 121
AN4
C
428 450Right-handed alpha
Helix 122
AN5
C
457 466Right-handed alpha
Helix 123
AN6
C
468 478Right-handed alpha
Helix 124
AN7
C
481 488Right-handed alpha
Helix 125
AN8
C
490 499Right-handed alpha
Helix 126
AN9
C
504 520Right-handed alpha
Helix 127
AO1
C
524 532Right-handed alpha
Helix 128
AO2
C
540 542Right-handed 310
Helix 129
AO3
C
543 552Right-handed alpha
Helix 130
AO4
C
567 576Right-handed alpha
Helix 131
AO5
C
585 590Right-handed alpha
Helix 132
AO6
C
608 616Right-handed alpha
Helix 133
AO7
C
616 626Right-handed alpha
Helix 134
AO8
C
631 639Right-handed alpha
Helix 135
AO9
C
649 657Right-handed alpha
Helix 136
AP1
C
658 660Right-handed 310
Helix 137
AP2
C
664 674Right-handed alpha
Helix 138
AP3
C
679 691Right-handed alpha
Helix 139
AP4
C
694 709Right-handed alpha
Helix 140
AP5
C
718 732Right-handed alpha
Helix 141
AP6
C
733 735Right-handed 310
Helix 142
AP7
C
774 780Right-handed alpha
Helix 143
AP8
C
781 786Right-handed alpha
Helix 144
AP9
C
787 800Right-handed alpha
Helix 145
AQ1
C
832 837Right-handed alpha
Helix 146
AQ2
C
840 850Right-handed alpha
Helix 147
AQ3
C
850 855Right-handed alpha
Helix 148
AQ4
D
11 27Right-handed alpha
Helix 149
AQ5
D
29 46Right-handed alpha
Helix 150
AQ6
D
50 61Right-handed alpha
Helix 151
AQ7
D
61 69Right-handed alpha
Helix 152
AQ8
D
70 73Right-handed 310
Helix 153
AQ9
D
84 89Right-handed alpha
Helix 154
AR1
D
103 119Right-handed alpha
Helix 155
AR2
D
124 134Right-handed alpha
Helix 156
AR3
D
135 145Right-handed alpha
Helix 157
AR4
D
183 206Right-handed alpha
Helix 158
AR5
D
208 217Right-handed alpha
Helix 159
AR6
D
220 231Right-handed alpha
Helix 160
AR7
D
236 241Right-handed 310
Helix 161
AR8
D
244 266Right-handed alpha
Helix 162
AR9
D
266 273Right-handed alpha
Helix 163
AS1
D
275 282Right-handed alpha
Helix 164
AS2
D
282 287Right-handed alpha
Helix 165
AS3
D
290 297Right-handed alpha
Helix 166
AS4
D
299 306Right-handed alpha
Helix 167
AS5
D
307 309Right-handed 310
Helix 168
AS6
D
310 327Right-handed alpha
Helix 169
AS7
D
334 340Right-handed alpha
Helix 170
AS8
D
342 351Right-handed alpha
Helix 171
AS9
D
360 364Right-handed 310
Helix 172
AT1
D
369 385Right-handed alpha
Helix 173
AT2
D
393 404Right-handed alpha
Helix 174
AT3
D
406 418Right-handed alpha
Helix 175
AT4
D
426 450Right-handed alpha
Helix 176
AT5
D
453 456Right-handed 310
Helix 177
AT6
D
457 467Right-handed alpha
Helix 178
AT7
D
468 476Right-handed alpha
Helix 179
AT8
D
479 487Right-handed alpha
Helix 180
AT9
D
490 499Right-handed alpha
Helix 181
AU1
D
504 519Right-handed alpha
Helix 182
AU2
D
523 532Right-handed alpha
Helix 183
AU3
D
542 557Right-handed alpha
Helix 184
AU4
D
567 579Right-handed alpha
Helix 185
AU5
D
582 589Right-handed alpha
Helix 186
AU6
D
603 616Right-handed alpha
Helix 187
AU7
D
616 626Right-handed alpha
Helix 188
AU8
D
628 639Right-handed alpha
Helix 189
AU9
D
648 654Right-handed alpha
Helix 190
AV1
D
664 674Right-handed alpha
Helix 191
AV2
D
679 693Right-handed alpha
Helix 192
AV3
D
694 710Right-handed alpha
Helix 193
AV4
D
714 736Right-handed alpha
Helix 194
AV5
D
737 753Right-handed alpha
Helix 195
AV6
D
774 804Right-handed alpha
Helix 196
AV7
D
820 854Right-handed alpha
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There are 4 sheets in PDB entry 5OT4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
174 175anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 166first strand
Strand 2
B
174 175anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
165 166first strand
Strand 2
C
174 175anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
165 166first strand
Strand 2
D
174 175anti-parallel
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