Analysis of interatomic Contacts of Structural Units in PDB entry:
5OVN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OVN entry

There are 2 chains in PDB entry 5OVN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 20	CYS 551
B	SER 2	SER 429

There are 34 helices in PDB entry 5OVN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	45	Right-handed alpha
Helix 2	AA2	A	78	82	Right-handed 310
Helix 3	AA3	A	95	99	Right-handed 310
Helix 4	AA4	A	123	128	Right-handed 310
Helix 5	AA5	A	154	159	Right-handed alpha
Helix 6	AA6	A	159	174	Right-handed alpha
Helix 7	AA7	A	193	210	Right-handed alpha
Helix 8	AA8	A	216	220	Right-handed 310
Helix 9	AA9	A	252	270	Right-handed alpha
Helix 10	AB1	A	275	281	Right-handed alpha
Helix 11	AB2	A	296	310	Right-handed alpha
Helix 12	AB3	A	363	383	Right-handed alpha
Helix 13	AB4	A	395	400	Right-handed alpha
Helix 14	AB5	A	473	482	Right-handed alpha
Helix 15	AB6	A	483	488	Right-handed alpha
Helix 16	AB7	A	499	509	Right-handed alpha
Helix 17	AB8	A	514	524	Right-handed alpha
Helix 18	AB9	A	543	549	Right-handed alpha
Helix 19	AC1	B	27	44	Right-handed alpha
Helix 20	AC2	B	76	84	Right-handed alpha
Helix 21	AC3	B	96	102	Right-handed 310
Helix 22	AC4	B	112	117	Right-handed 310
Helix 23	AC5	B	123	128	Right-handed 310
Helix 24	AC6	B	133	137	Right-handed 310
Helix 25	AC7	B	154	163	Right-handed alpha
Helix 26	AC8	B	163	173	Right-handed alpha
Helix 27	AC9	B	193	208	Right-handed alpha
Helix 28	AD1	B	252	267	Right-handed alpha
Helix 29	AD2	B	275	282	Right-handed alpha
Helix 30	AD3	B	296	311	Right-handed alpha
Helix 31	AD4	B	312	313	Right-handed 310
Helix 32	AD5	B	314	318	Right-handed 310
Helix 33	AD6	B	363	383	Right-handed alpha
Helix 34	AD7	B	421	428	Right-handed alpha

There are 10 sheets in PDB entry 5OVN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	49	first strand
Strand 2	A	141	145	anti-parallel
Strand 3	A	129	131	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	64	first strand
Strand 2	A	70	74	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	109	first strand
Strand 2	A	185	190	anti-parallel
Strand 3	A	177	182	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	228	first strand
Strand 2	A	231	233	anti-parallel
Strand 3	A	238	240	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	355	first strand
Strand 2	A	335	342	anti-parallel
Strand 3	A	325	330	anti-parallel
Strand 4	A	388	392	parallel
Strand 5	A	416	418	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	465	467	first strand
Strand 2	A	455	460	anti-parallel
Strand 3	A	441	447	anti-parallel
Strand 4	A	494	497	parallel
Strand 5	A	532	534	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	49	first strand
Strand 2	B	141	145	anti-parallel
Strand 3	B	129	131	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	64	first strand
Strand 2	B	70	74	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	182	first strand
Strand 2	B	185	190	anti-parallel
Strand 3	B	104	109	anti-parallel
Strand 4	B	218	220	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	355	first strand
Strand 2	B	335	342	anti-parallel
Strand 3	B	325	330	anti-parallel
Strand 4	B	388	391	parallel
Strand 5	B	415	417	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OVN

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OVN