Analysis of interatomic Contacts of Structural Units in PDB entry:
5OVQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OVQ entry

There are 12 chains in PDB entry 5OVQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 5	VAL 48
A	THR 50	ALA 223
B	VAL 3	VAL 48
B	THR 50	ALA 223
C	SER 5	VAL 48
C	THR 50	ALA 223
D	SER 5	VAL 48
D	THR 50	VAL 222
E	SER 5	VAL 48
E	THR 50	ALA 223
F	SER 5	VAL 48
F	THR 50	ARG 149

There are 96 helices in PDB entry 5OVQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed 310
Helix 2	AA2	A	46	59	Right-handed alpha
Helix 3	AA3	A	59	65	Right-handed alpha
Helix 4	AA4	A	77	93	Right-handed alpha
Helix 5	AA5	A	106	112	Right-handed alpha
Helix 6	AA6	A	150	168	Right-handed alpha
Helix 7	AA7	A	185	190	Right-handed 310
Helix 8	AA8	A	198	206	Right-handed alpha
Helix 9	AA9	B	28	32	Right-handed 310
Helix 10	AB1	B	46	59	Right-handed alpha
Helix 11	AB2	B	59	66	Right-handed alpha
Helix 12	AB3	B	77	93	Right-handed alpha
Helix 13	AB4	B	106	112	Right-handed alpha
Helix 14	AB5	B	150	168	Right-handed alpha
Helix 15	AB6	B	185	190	Right-handed 310
Helix 16	AB7	B	198	206	Right-handed alpha
Helix 17	AB8	C	28	32	Right-handed 310
Helix 18	AB9	C	46	59	Right-handed alpha
Helix 19	AC1	C	59	65	Right-handed alpha
Helix 20	AC2	C	77	93	Right-handed alpha
Helix 21	AC3	C	106	112	Right-handed alpha
Helix 22	AC4	C	150	168	Right-handed alpha
Helix 23	AC5	C	185	190	Right-handed 310
Helix 24	AC6	C	198	206	Right-handed alpha
Helix 25	AC7	D	28	32	Right-handed 310
Helix 26	AC8	D	46	59	Right-handed alpha
Helix 27	AC9	D	59	66	Right-handed alpha
Helix 28	AD1	D	77	93	Right-handed alpha
Helix 29	AD2	D	106	112	Right-handed alpha
Helix 30	AD3	D	150	168	Right-handed alpha
Helix 31	AD4	D	185	190	Right-handed 310
Helix 32	AD5	D	198	206	Right-handed alpha
Helix 33	AD6	E	28	32	Right-handed 310
Helix 34	AD7	E	46	59	Right-handed alpha
Helix 35	AD8	E	59	66	Right-handed alpha
Helix 36	AD9	E	77	93	Right-handed alpha
Helix 37	AE1	E	106	112	Right-handed alpha
Helix 38	AE2	E	150	168	Right-handed alpha
Helix 39	AE3	E	185	190	Right-handed 310
Helix 40	AE4	E	198	206	Right-handed alpha
Helix 41	AE5	F	28	32	Right-handed 310
Helix 42	AE6	F	46	59	Right-handed alpha
Helix 43	AE7	F	59	65	Right-handed alpha
Helix 44	AE8	F	77	93	Right-handed alpha
Helix 45	AE9	F	106	112	Right-handed alpha
Helix 46	AF1	F	150	168	Right-handed alpha
Helix 47	AF2	F	185	190	Right-handed 310
Helix 48	AF3	F	198	206	Right-handed alpha
Helix 49	AF4	G	28	32	Right-handed 310
Helix 50	AF5	G	46	59	Right-handed alpha
Helix 51	AF6	G	59	66	Right-handed alpha
Helix 52	AF7	G	77	93	Right-handed alpha
Helix 53	AF8	G	106	112	Right-handed alpha
Helix 54	AF9	G	150	168	Right-handed alpha
Helix 55	AG1	G	185	190	Right-handed 310
Helix 56	AG2	G	198	206	Right-handed alpha
Helix 57	AG3	H	28	32	Right-handed 310
Helix 58	AG4	H	46	59	Right-handed alpha
Helix 59	AG5	H	59	66	Right-handed alpha
Helix 60	AG6	H	77	93	Right-handed alpha
Helix 61	AG7	H	106	112	Right-handed alpha
Helix 62	AG8	H	150	168	Right-handed alpha
Helix 63	AG9	H	185	188	Right-handed 310
Helix 64	AH1	H	198	206	Right-handed alpha
Helix 65	AH2	I	28	32	Right-handed 310
Helix 66	AH3	I	46	59	Right-handed alpha
Helix 67	AH4	I	59	65	Right-handed alpha
Helix 68	AH5	I	77	93	Right-handed alpha
Helix 69	AH6	I	106	112	Right-handed alpha
Helix 70	AH7	I	150	168	Right-handed alpha
Helix 71	AH8	I	185	190	Right-handed 310
Helix 72	AH9	I	198	206	Right-handed alpha
Helix 73	AI1	J	28	32	Right-handed 310
Helix 74	AI2	J	46	59	Right-handed alpha
Helix 75	AI3	J	59	66	Right-handed alpha
Helix 76	AI4	J	77	93	Right-handed alpha
Helix 77	AI5	J	106	112	Right-handed alpha
Helix 78	AI6	J	150	168	Right-handed alpha
Helix 79	AI7	J	185	190	Right-handed 310
Helix 80	AI8	J	198	206	Right-handed alpha
Helix 81	AI9	K	28	32	Right-handed 310
Helix 82	AJ1	K	46	59	Right-handed alpha
Helix 83	AJ2	K	59	65	Right-handed alpha
Helix 84	AJ3	K	77	93	Right-handed alpha
Helix 85	AJ4	K	106	112	Right-handed alpha
Helix 86	AJ5	K	150	168	Right-handed alpha
Helix 87	AJ6	K	185	190	Right-handed 310
Helix 88	AJ7	K	198	206	Right-handed alpha
Helix 89	AJ8	L	28	32	Right-handed 310
Helix 90	AJ9	L	46	59	Right-handed alpha
Helix 91	AK1	L	59	66	Right-handed alpha
Helix 92	AK2	L	77	93	Right-handed alpha
Helix 93	AK3	L	106	112	Right-handed alpha
Helix 94	AK4	L	150	168	Right-handed alpha
Helix 95	AK5	L	185	188	Right-handed 310
Helix 96	AK6	L	198	206	Right-handed alpha

There are 24 sheets in PDB entry 5OVQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	27	first strand
Strand 2	A	16	20	anti-parallel
Strand 3	A	100	102	anti-parallel
Strand 4	A	68	74	parallel
Strand 5	A	35	39	parallel
Strand 6	A	126	131	anti-parallel
Strand 7	A	137	143	anti-parallel
Strand 8	B	137	143	anti-parallel
Strand 9	B	126	131	anti-parallel
Strand 10	B	35	39	anti-parallel
Strand 11	B	68	74	parallel
Strand 12	B	100	102	parallel
Strand 13	B	16	20	anti-parallel
Strand 14	B	23	27	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	184	first strand
Strand 2	B	180	184	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	192	first strand
Strand 2	A	217	220	anti-parallel
Strand 3	A	211	214	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	217	220	anti-parallel
Strand 3	B	211	214	anti-parallel

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There are 14 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	27	first strand
Strand 2	C	16	20	anti-parallel
Strand 3	C	100	102	anti-parallel
Strand 4	C	68	74	parallel
Strand 5	C	35	40	parallel
Strand 6	C	126	131	anti-parallel
Strand 7	C	137	143	anti-parallel
Strand 8	D	137	143	anti-parallel
Strand 9	D	126	131	anti-parallel
Strand 10	D	35	39	anti-parallel
Strand 11	D	68	74	parallel
Strand 12	D	100	102	parallel
Strand 13	D	16	20	anti-parallel
Strand 14	D	25	27	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	184	first strand
Strand 2	D	180	184	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	192	first strand
Strand 2	C	217	220	anti-parallel
Strand 3	C	211	214	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	192	first strand
Strand 2	D	217	220	anti-parallel
Strand 3	D	211	214	anti-parallel

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There are 14 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	25	27	first strand
Strand 2	E	16	20	anti-parallel
Strand 3	E	100	102	anti-parallel
Strand 4	E	68	74	parallel
Strand 5	E	35	39	parallel
Strand 6	E	126	131	anti-parallel
Strand 7	E	137	143	anti-parallel
Strand 8	F	137	143	anti-parallel
Strand 9	F	126	131	anti-parallel
Strand 10	F	35	39	anti-parallel
Strand 11	F	68	74	parallel
Strand 12	F	100	102	parallel
Strand 13	F	16	20	anti-parallel
Strand 14	F	25	27	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	180	184	first strand
Strand 2	F	180	184	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	191	192	first strand
Strand 2	E	217	220	anti-parallel
Strand 3	E	211	214	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	191	192	first strand
Strand 2	F	217	220	anti-parallel
Strand 3	F	211	214	anti-parallel

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There are 14 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	25	27	first strand
Strand 2	G	16	20	anti-parallel
Strand 3	G	100	102	anti-parallel
Strand 4	G	68	74	parallel
Strand 5	G	35	39	parallel
Strand 6	G	126	131	anti-parallel
Strand 7	G	137	143	anti-parallel
Strand 8	H	137	143	anti-parallel
Strand 9	H	126	131	anti-parallel
Strand 10	H	35	39	anti-parallel
Strand 11	H	68	74	parallel
Strand 12	H	100	102	parallel
Strand 13	H	16	20	anti-parallel
Strand 14	H	25	27	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	180	184	first strand
Strand 2	H	180	184	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	191	192	first strand
Strand 2	G	217	220	anti-parallel
Strand 3	G	211	214	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	190	192	first strand
Strand 2	H	217	221	anti-parallel
Strand 3	H	211	214	anti-parallel

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There are 14 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	25	27	first strand
Strand 2	I	16	20	anti-parallel
Strand 3	I	100	102	anti-parallel
Strand 4	I	68	74	parallel
Strand 5	I	35	39	parallel
Strand 6	I	126	131	anti-parallel
Strand 7	I	137	143	anti-parallel
Strand 8	J	137	143	anti-parallel
Strand 9	J	126	131	anti-parallel
Strand 10	J	35	39	anti-parallel
Strand 11	J	68	74	parallel
Strand 12	J	100	102	parallel
Strand 13	J	16	20	anti-parallel
Strand 14	J	25	27	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	180	184	first strand
Strand 2	J	180	184	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	191	192	first strand
Strand 2	I	217	220	anti-parallel
Strand 3	I	211	214	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	191	192	first strand
Strand 2	J	217	220	anti-parallel
Strand 3	J	211	214	anti-parallel

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There are 14 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	25	27	first strand
Strand 2	K	16	20	anti-parallel
Strand 3	K	100	102	anti-parallel
Strand 4	K	68	74	parallel
Strand 5	K	35	39	parallel
Strand 6	K	126	131	anti-parallel
Strand 7	K	137	143	anti-parallel
Strand 8	L	137	143	anti-parallel
Strand 9	L	126	131	anti-parallel
Strand 10	L	35	39	anti-parallel
Strand 11	L	68	74	parallel
Strand 12	L	100	102	parallel
Strand 13	L	16	20	anti-parallel
Strand 14	L	23	27	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	180	184	first strand
Strand 2	L	180	184	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	191	192	first strand
Strand 2	K	217	220	anti-parallel
Strand 3	K	211	214	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	190	192	first strand
Strand 2	L	217	221	anti-parallel
Strand 3	L	211	214	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OVQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OVQ