Analysis of interatomic Contacts of Structural Units in PDB entry:
5OWO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OWO entry

There are 4 chains in PDB entry 5OWO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 22GLU 201
B
 ASN 23GLU 201
C
 GLN 22GLU 201
D
 GLN 22ILE 200
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 5OWO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 42Right-handed alpha
Helix 2
AA2
A
49 58Right-handed alpha
Helix 3
AA3
A
58 71Right-handed alpha
Helix 4
AA4
A
131 133Right-handed 310
Helix 5
AA5
A
144 156Right-handed alpha
Helix 6
AA6
A
156 166Right-handed alpha
Helix 7
AA7
A
178 200Right-handed alpha
Helix 8
AA8
B
26 42Right-handed alpha
Helix 9
AA9
B
49 58Right-handed alpha
Helix 10
AB1
B
58 71Right-handed alpha
Helix 11
AB2
B
131 133Right-handed 310
Helix 12
AB3
B
144 156Right-handed alpha
Helix 13
AB4
B
156 167Right-handed alpha
Helix 14
AB5
B
179 199Right-handed alpha
Helix 15
AB6
C
26 42Right-handed alpha
Helix 16
AB7
C
49 58Right-handed alpha
Helix 17
AB8
C
58 71Right-handed alpha
Helix 18
AB9
C
131 133Right-handed 310
Helix 19
AC1
C
144 156Right-handed alpha
Helix 20
AC2
C
156 167Right-handed alpha
Helix 21
AC3
C
178 200Right-handed alpha
Helix 22
AC4
D
26 42Right-handed alpha
Helix 23
AC5
D
49 58Right-handed alpha
Helix 24
AC6
D
58 71Right-handed alpha
Helix 25
AC7
D
131 133Right-handed 310
Helix 26
AC8
D
144 156Right-handed alpha
Helix 27
AC9
D
156 166Right-handed alpha
Helix 28
AD1
D
179 199Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5OWO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 104first strand
Strand 2
A
76 84anti-parallel
Strand 3
A
113 120anti-parallel
Strand 4
A
135 140anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 104first strand
Strand 2
B
76 84anti-parallel
Strand 3
B
113 120anti-parallel
Strand 4
B
135 140anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
98 104first strand
Strand 2
C
76 84anti-parallel
Strand 3
C
113 120anti-parallel
Strand 4
C
135 140anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
98 104first strand
Strand 2
D
76 84anti-parallel
Strand 3
D
113 120anti-parallel
Strand 4
D
135 140anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il