Analysis of interatomic Contacts of Structural Units in PDB entry:
5OWP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OWP entry

There are 3 chains in PDB entry 5OWP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLN 1GLY 1117
D
 SER 1ALA 2
D
 ASP 4ALA 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5OWP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
28 32Right-handed 310
Helix 2
AA2
H
53 57Right-handed 310
Helix 3
AA3
H
76 78Right-handed 310
Helix 4
AA4
H
89 93Right-handed 310
Helix 5
AA5
H
1037 1041Right-handed 310
Helix 6
AA6
H
1088 1092Right-handed 310
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There are 6 sheets in PDB entry 5OWP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
80 85anti-parallel
Strand 4
H
70 75anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
113 117parallel
Strand 3
H
94 100anti-parallel
Strand 4
H
34 40anti-parallel
Strand 5
H
44 51anti-parallel
Strand 6
H
60 62anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
113 117parallel
Strand 3
H
94 100anti-parallel
Strand 4
H
108 109anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
1011 1013first strand
Strand 2
H
1024 1031anti-parallel
Strand 3
H
1079 1085anti-parallel
Strand 4
H
1071 1076anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
1016 1019first strand
Strand 2
H
1111 1115parallel
Strand 3
H
1093 1101anti-parallel
Strand 4
H
1043 1048anti-parallel
Strand 5
H
1052 1058anti-parallel
Strand 6
H
1062 1063anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
1016 1019first strand
Strand 2
H
1111 1115parallel
Strand 3
H
1093 1101anti-parallel
Strand 4
H
1104 1107anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il