Analysis of interatomic Contacts of Structural Units in PDB entry:
5OXD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OXD entry

There is 1 chain in PDB entry 5OXD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 39SER 618
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 5OXD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
75 89Right-handed alpha
Helix 2
AA2
A
113 121Right-handed alpha
Helix 3
AA3
A
148 163Right-handed alpha
Helix 4
AA4
A
194 208Right-handed alpha
Helix 5
AA5
A
220 224Right-handed 310
Helix 6
AA6
A
235 249Right-handed alpha
Helix 7
AA7
A
258 262Right-handed 310
Helix 8
AA8
A
266 286Right-handed alpha
Helix 9
AA9
A
303 318Right-handed alpha
Helix 10
AB1
A
318 323Right-handed alpha
Helix 11
AB2
A
336 340Right-handed alpha
Helix 12
AB3
A
347 357Right-handed alpha
Helix 13
AB4
A
376 388Right-handed alpha
Helix 14
AB5
A
418 421Right-handed 310
Helix 15
AB6
A
433 450Right-handed alpha
Helix 16
AB7
A
455 469Right-handed alpha
Helix 17
AB8
A
471 480Right-handed alpha
Helix 18
AB9
A
498 514Right-handed alpha
Helix 19
AC1
A
518 543Right-handed alpha
Helix 20
AC2
A
544 576Right-handed alpha
Helix 21
AC3
A
579 600Right-handed alpha
Helix 22
AC4
A
608 617Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 5OXD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
171 175anti-parallel
Strand 3
A
133 138anti-parallel
Strand 4
A
141 146anti-parallel
Strand 5
A
102 108parallel
Strand 6
A
65 69parallel
Strand 7
A
92 93parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
167 168anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 185first strand
Strand 2
A
212 215parallel
Strand 3
A
252 257parallel
Strand 4
A
292 295parallel
Strand 5
A
329 331parallel
Strand 6
A
362 365parallel
Strand 7
A
391 395parallel
Strand 8
A
423 428parallel
Strand 9
A
181 185parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 342first strand
Strand 2
A
345 346anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
485 486first strand
Strand 2
A
492 493anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il