Analysis of interatomic Contacts of Structural Units in PDB entry:
5OXF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OXF entry

There are 4 chains in PDB entry 5OXF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 732
B
 MET 1ASP 728
C
 GLY -2HIS 611
D
 GLY -2HIS 611
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 95 helices in PDB entry 5OXF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 9Right-handed alpha
Helix 2
AA2
A
29 38Right-handed alpha
Helix 3
AA3
A
43 50Right-handed alpha
Helix 4
AA4
A
50 61Right-handed alpha
Helix 5
AA5
A
65 82Right-handed alpha
Helix 6
AA6
A
87 98Right-handed alpha
Helix 7
AA7
A
103 112Right-handed alpha
Helix 8
AA8
A
119 141Right-handed alpha
Helix 9
AA9
A
145 159Right-handed alpha
Helix 10
AB1
A
175 184Right-handed alpha
Helix 11
AB2
A
216 231Right-handed alpha
Helix 12
AB3
A
232 243Right-handed alpha
Helix 13
AB4
A
274 276Right-handed 310
Helix 14
AB5
A
287 292Right-handed alpha
Helix 15
AB6
A
304 318Right-handed alpha
Helix 16
AB7
A
334 347Right-handed alpha
Helix 17
AB8
A
367 382Right-handed alpha
Helix 18
AB9
A
385 394Right-handed 310
Helix 19
AC1
A
400 410Right-handed alpha
Helix 20
AC2
A
421 432Right-handed alpha
Helix 21
AC3
A
436 506Right-handed alpha
Helix 22
AC4
A
515 538Right-handed alpha
Helix 23
AC5
A
541 549Right-handed alpha
Helix 24
AC6
A
549 581Right-handed alpha
Helix 25
AC7
A
584 626Right-handed alpha
Helix 26
AC8
A
631 677Right-handed alpha
Helix 27
AC9
A
691 730Right-handed alpha
Helix 28
AD1
B
2 9Right-handed alpha
Helix 29
AD2
B
29 38Right-handed alpha
Helix 30
AD3
B
43 50Right-handed alpha
Helix 31
AD4
B
50 61Right-handed alpha
Helix 32
AD5
B
65 82Right-handed alpha
Helix 33
AD6
B
88 98Right-handed alpha
Helix 34
AD7
B
103 112Right-handed alpha
Helix 35
AD8
B
119 140Right-handed alpha
Helix 36
AD9
B
145 159Right-handed alpha
Helix 37
AE1
B
175 184Right-handed alpha
Helix 38
AE2
B
218 228Right-handed alpha
Helix 39
AE3
B
230 243Right-handed alpha
Helix 40
AE4
B
274 276Right-handed 310
Helix 41
AE5
B
287 292Right-handed alpha
Helix 42
AE6
B
304 318Right-handed alpha
Helix 43
AE7
B
334 347Right-handed alpha
Helix 44
AE8
B
367 382Right-handed alpha
Helix 45
AE9
B
385 394Right-handed 310
Helix 46
AF1
B
400 410Right-handed alpha
Helix 47
AF2
B
421 432Right-handed alpha
Helix 48
AF3
B
436 463Right-handed alpha
Helix 49
AF4
B
478 506Right-handed alpha
Helix 50
AF5
B
522 537Right-handed alpha
Helix 51
AF6
B
557 581Right-handed alpha
Helix 52
AF7
B
584 600Right-handed alpha
Helix 53
AF8
B
667 685Right-handed alpha
Helix 54
AF9
B
706 723Right-handed alpha
Helix 55
AG1
B
724 728Right-handed 310
Helix 56
AG2
C
-1 18Right-handed alpha
Helix 57
AG3
C
25 37Right-handed alpha
Helix 58
AG4
C
44 58Right-handed alpha
Helix 59
AG5
C
73 83Right-handed alpha
Helix 60
AG6
C
122 124Right-handed 310
Helix 61
AG7
C
125 131Right-handed alpha
Helix 62
AG8
C
167 176Right-handed alpha
Helix 63
AG9
C
191 203Right-handed alpha
Helix 64
AH1
C
217 221Right-handed 310
Helix 65
AH2
C
226 239Right-handed alpha
Helix 66
AH3
C
262 273Right-handed alpha
Helix 67
AH4
C
274 353Right-handed alpha
Helix 68
AH5
C
388 397Right-handed alpha
Helix 69
AH6
C
400 443Right-handed alpha
Helix 70
AH7
C
453 466Right-handed alpha
Helix 71
AH8
C
466 472Right-handed alpha
Helix 72
AH9
C
472 497Right-handed alpha
Helix 73
AI1
C
500 521Right-handed alpha
Helix 74
AI2
C
536 548Right-handed alpha
Helix 75
AI3
C
549 558Right-handed alpha
Helix 76
AI4
C
561 608Right-handed alpha
Helix 77
AI5
D
-1 18Right-handed alpha
Helix 78
AI6
D
25 37Right-handed alpha
Helix 79
AI7
D
44 58Right-handed alpha
Helix 80
AI8
D
73 83Right-handed alpha
Helix 81
AI9
D
125 131Right-handed alpha
Helix 82
AJ1
D
167 176Right-handed alpha
Helix 83
AJ2
D
191 202Right-handed alpha
Helix 84
AJ3
D
226 239Right-handed alpha
Helix 85
AJ4
D
262 273Right-handed alpha
Helix 86
AJ5
D
274 353Right-handed alpha
Helix 87
AJ6
D
388 397Right-handed alpha
Helix 88
AJ7
D
400 443Right-handed alpha
Helix 89
AJ8
D
453 466Right-handed alpha
Helix 90
AJ9
D
466 472Right-handed alpha
Helix 91
AK1
D
472 497Right-handed alpha
Helix 92
AK2
D
500 521Right-handed alpha
Helix 93
AK3
D
536 548Right-handed alpha
Helix 94
AK4
D
549 558Right-handed alpha
Helix 95
AK5
D
561 608Right-handed alpha
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There are 8 sheets in PDB entry 5OXF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
210 214anti-parallel
Strand 3
A
278 285anti-parallel
Strand 4
A
199 204parallel
Strand 5
A
294 298anti-parallel
Strand 6
A
163 169parallel
Strand 7
A
322 328parallel
Strand 8
A
354 358parallel
Strand 9
A
395 398parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 261first strand
Strand 2
B
210 214anti-parallel
Strand 3
B
278 285anti-parallel
Strand 4
B
199 204parallel
Strand 5
B
294 298anti-parallel
Strand 6
B
163 169parallel
Strand 7
B
323 328parallel
Strand 8
B
354 358parallel
Strand 9
B
395 398parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 121first strand
Strand 2
C
108 113anti-parallel
Strand 3
C
139 146anti-parallel
Strand 4
C
99 103parallel
Strand 5
C
154 158anti-parallel
Strand 6
C
62 67parallel
Strand 7
C
181 186parallel
Strand 8
C
212 215parallel
Strand 9
C
247 248parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
356 359first strand
Strand 2
C
383 386anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
362 364first strand
Strand 2
C
378 380anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
118 122first strand
Strand 2
D
108 113anti-parallel
Strand 3
D
139 146anti-parallel
Strand 4
D
99 103parallel
Strand 5
D
156 158anti-parallel
Strand 6
D
64 67parallel
Strand 7
D
181 186parallel
Strand 8
D
212 215parallel
Strand 9
D
247 248parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
356 359first strand
Strand 2
D
383 386anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
362 364first strand
Strand 2
D
378 380anti-parallel
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