Analysis of interatomic Contacts of Structural Units in PDB entry:
5OXR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OXR entry

There are 3 chains in PDB entry 5OXR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 205PHE 355
B
 VAL 204PHE 355
C
 ALA 205PHE 355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 5OXR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
207 234Right-handed alpha
Helix 2
AA2
A
253 264Right-handed alpha
Helix 3
AA3
A
273 288Right-handed alpha
Helix 4
AA4
A
324 328Right-handed 310
Helix 5
AA5
B
205 234Right-handed alpha
Helix 6
AA6
B
254 264Right-handed alpha
Helix 7
AA7
B
273 288Right-handed alpha
Helix 8
AA8
B
324 328Right-handed 310
Helix 9
AA9
C
206 234Right-handed alpha
Helix 10
AB1
C
253 264Right-handed alpha
Helix 11
AB2
C
273 288Right-handed alpha
Helix 12
AB3
C
324 328Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 5OXR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 240first strand
Strand 2
A
243 252anti-parallel
Strand 3
A
349 355anti-parallel
Strand 4
A
267 268anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
331 334anti-parallel
Strand 3
A
340 343anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 240first strand
Strand 2
B
243 253anti-parallel
Strand 3
B
348 355anti-parallel
Strand 4
B
267 268anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 292first strand
Strand 2
B
331 334anti-parallel
Strand 3
B
340 343anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
237 240first strand
Strand 2
C
243 252anti-parallel
Strand 3
C
349 355anti-parallel
Strand 4
C
267 268anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
291 292first strand
Strand 2
C
331 334anti-parallel
Strand 3
C
340 343anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il