Analysis of interatomic Contacts of Structural Units in PDB entry:
5OXV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OXV entry

There are 18 chains in PDB entry 5OXV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
J	C -312	A -3
R	THR 29	ALA 121
Q	ALA 14	LYS 118
P	ASN 25	GLY 102
O	HIS 39	ALA 135
N	LYS 28	LYS 122
M	THR 16	LYS 118
L	LYS 20	GLY 102
K	PRO 38	ARG 134
I	C 3	T 313
H	THR 29	ALA 121
G	ALA 14	LYS 118
F	ASN 25	GLY 102
E	HIS 39	ALA 135
D	LYS 28	LYS 122
C	THR 16	LYS 118
B	LYS 20	GLY 102
A	PRO 38	ARG 134

There are 72 helices in PDB entry 5OXV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	34	46	Right-handed alpha
Helix 2	AA2	R	52	81	Right-handed alpha
Helix 3	AA3	R	87	99	Right-handed alpha
Helix 4	AA4	R	100	121	Right-handed alpha
Helix 5	AA5	Q	16	21	Right-handed alpha
Helix 6	AA6	Q	26	36	Right-handed alpha
Helix 7	AA7	Q	45	73	Right-handed alpha
Helix 8	AA8	Q	79	90	Right-handed alpha
Helix 9	AA9	Q	92	97	Right-handed alpha
Helix 10	AB1	Q	112	116	Right-handed 310
Helix 11	AB2	P	25	29	Right-handed 310
Helix 12	AB3	P	30	41	Right-handed alpha
Helix 13	AB4	P	49	76	Right-handed alpha
Helix 14	AB5	P	82	93	Right-handed alpha
Helix 15	AB6	O	44	56	Right-handed alpha
Helix 16	AB7	O	63	77	Right-handed alpha
Helix 17	AB8	O	85	114	Right-handed alpha
Helix 18	AB9	O	120	132	Right-handed alpha
Helix 19	AC1	N	34	46	Right-handed alpha
Helix 20	AC2	N	52	81	Right-handed alpha
Helix 21	AC3	N	87	99	Right-handed alpha
Helix 22	AC4	N	100	121	Right-handed alpha
Helix 23	AC5	M	18	22	Right-handed 310
Helix 24	AC6	M	26	37	Right-handed alpha
Helix 25	AC7	M	46	73	Right-handed alpha
Helix 26	AC8	M	79	90	Right-handed alpha
Helix 27	AC9	M	90	97	Right-handed alpha
Helix 28	AD1	M	112	116	Right-handed 310
Helix 29	AD2	L	24	29	Right-handed 310
Helix 30	AD3	L	30	41	Right-handed alpha
Helix 31	AD4	L	49	76	Right-handed alpha
Helix 32	AD5	L	82	93	Right-handed alpha
Helix 33	AD6	K	44	57	Right-handed alpha
Helix 34	AD7	K	63	77	Right-handed alpha
Helix 35	AD8	K	85	114	Right-handed alpha
Helix 36	AD9	K	120	132	Right-handed alpha
Helix 37	AE1	H	34	46	Right-handed alpha
Helix 38	AE2	H	52	81	Right-handed alpha
Helix 39	AE3	H	87	99	Right-handed alpha
Helix 40	AE4	H	100	121	Right-handed alpha
Helix 41	AE5	G	16	21	Right-handed alpha
Helix 42	AE6	G	26	36	Right-handed alpha
Helix 43	AE7	G	45	73	Right-handed alpha
Helix 44	AE8	G	79	90	Right-handed alpha
Helix 45	AE9	G	92	97	Right-handed alpha
Helix 46	AF1	G	112	116	Right-handed 310
Helix 47	AF2	F	25	29	Right-handed 310
Helix 48	AF3	F	30	41	Right-handed alpha
Helix 49	AF4	F	49	76	Right-handed alpha
Helix 50	AF5	F	82	93	Right-handed alpha
Helix 51	AF6	E	44	56	Right-handed alpha
Helix 52	AF7	E	63	77	Right-handed alpha
Helix 53	AF8	E	85	114	Right-handed alpha
Helix 54	AF9	E	120	132	Right-handed alpha
Helix 55	AG1	D	34	46	Right-handed alpha
Helix 56	AG2	D	52	81	Right-handed alpha
Helix 57	AG3	D	87	99	Right-handed alpha
Helix 58	AG4	D	100	121	Right-handed alpha
Helix 59	AG5	C	18	22	Right-handed 310
Helix 60	AG6	C	26	37	Right-handed alpha
Helix 61	AG7	C	46	73	Right-handed alpha
Helix 62	AG8	C	79	90	Right-handed alpha
Helix 63	AG9	C	90	97	Right-handed alpha
Helix 64	AH1	C	112	116	Right-handed 310
Helix 65	AH2	B	24	29	Right-handed 310
Helix 66	AH3	B	30	41	Right-handed alpha
Helix 67	AH4	B	49	76	Right-handed alpha
Helix 68	AH5	B	82	93	Right-handed alpha
Helix 69	AH6	A	44	57	Right-handed alpha
Helix 70	AH7	A	63	77	Right-handed alpha
Helix 71	AH8	A	85	114	Right-handed alpha
Helix 72	AH9	A	120	132	Right-handed alpha

There are 20 sheets in PDB entry 5OXV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	50	51	first strand
Strand 2	Q	77	78	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	85	86	first strand
Strand 2	Q	42	43	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	100	102	first strand
Strand 2	L	96	98	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	45	46	first strand
Strand 2	O	118	119	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	80	81	first strand
Strand 2	O	83	84	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	97	98	first strand
Strand 2	M	101	102	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	50	51	first strand
Strand 2	M	77	78	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	85	86	first strand
Strand 2	M	42	43	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	45	46	first strand
Strand 2	K	118	119	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	80	81	first strand
Strand 2	K	83	84	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	50	51	first strand
Strand 2	G	77	78	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	85	86	first strand
Strand 2	G	42	43	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	100	102	first strand
Strand 2	B	96	98	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	46	first strand
Strand 2	E	118	119	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	81	first strand
Strand 2	E	83	84	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	97	98	first strand
Strand 2	C	101	102	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	51	first strand
Strand 2	C	77	78	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	86	first strand
Strand 2	C	42	43	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	A	118	119	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	81	first strand
Strand 2	A	83	84	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OXV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OXV