Analysis of interatomic Contacts of Structural Units in PDB entry:
5OY3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OY3 entry

There are 2 chains in PDB entry 5OY3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1157ALA 1639
B
 ARG 17GLY 33
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5OY3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1161 1165Right-handed 310
Helix 2
AA2
A
1177 1182Right-handed alpha
Helix 3
AA3
A
1192 1197Right-handed alpha
Helix 4
AA4
A
1198 1207Right-handed alpha
Helix 5
AA5
A
1217 1223Right-handed alpha
Helix 6
AA6
A
1225 1229Right-handed 310
Helix 7
AA7
A
1230 1238Right-handed alpha
Helix 8
AA8
A
1277 1289Right-handed alpha
Helix 9
AA9
A
1340 1347Right-handed alpha
Helix 10
AB1
A
1348 1350Right-handed 310
Helix 11
AB2
A
1351 1355Right-handed 310
Helix 12
AB3
A
1361 1366Right-handed 310
Helix 13
AB4
A
1392 1396Right-handed 310
Helix 14
AB5
A
1414 1416Right-handed 310
Helix 15
AB6
A
1417 1428Right-handed alpha
Helix 16
AB7
A
1440 1447Right-handed alpha
Helix 17
AB8
A
1489 1507Right-handed alpha
Helix 18
AB9
A
1513 1525Right-handed alpha
Helix 19
AC1
A
1529 1557Right-handed alpha
Helix 20
AC2
A
1602 1610Right-handed alpha
Helix 21
AC3
A
1623 1634Right-handed alpha
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There are 4 sheets in PDB entry 5OY3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1187 1189first strand
Strand 2
A
1212 1216parallel
Strand 3
A
1461 1464anti-parallel
Strand 4
A
1397 1402anti-parallel
Strand 5
A
1478 1485anti-parallel
Strand 6
A
1377 1381anti-parallel
Strand 7
A
1325 1333anti-parallel
Strand 8
A
1242 1249anti-parallel
Strand 9
A
1271 1276anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1370 1371first strand
Strand 2
B
25 26parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1386 1390first strand
Strand 2
A
1469 1474anti-parallel
Strand 3
A
1408 1413anti-parallel
Strand 4
A
1452 1456anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1562 1563first strand
Strand 2
A
1617 1620parallel
Strand 3
A
1585 1589anti-parallel
Strand 4
A
1597 1601anti-parallel
Strand 5
B
19 20parallel
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