Analysis of interatomic Contacts of Structural Units in PDB entry:
5OY5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OY5 entry

There is 1 chain in PDB entry 5OY5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 8PHE 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 5OY5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 23Right-handed 310
Helix 2
AA2
A
24 28Right-handed 310
Helix 3
AA3
A
53 59Right-handed alpha
Helix 4
AA4
A
67 71Right-handed 310
Helix 5
AA5
A
74 80Right-handed alpha
Helix 6
AA6
A
81 84Right-handed 310
Helix 7
AA7
A
135 143Right-handed alpha
Helix 8
AA8
A
146 163Right-handed alpha
Helix 9
AA9
A
198 202Right-handed 310
Helix 10
AB1
A
203 213Right-handed alpha
Helix 11
AB2
A
251 261Right-handed alpha
Helix 12
AB3
A
294 327Right-handed alpha
Helix 13
AB4
A
328 334Right-handed alpha
Helix 14
AB5
A
342 347Right-handed alpha
Helix 15
AB6
A
354 358Right-handed 310
Helix 16
AB7
A
378 390Right-handed alpha
Helix 17
AB8
A
402 407Right-handed alpha
Helix 18
AB9
A
408 412Right-handed 310
Helix 19
AC1
A
413 418Right-handed alpha
Helix 20
AC2
A
439 444Right-handed 310
Helix 21
AC3
A
461 465Right-handed 310
Helix 22
AC4
A
466 477Right-handed alpha
Helix 23
AC5
A
486 507Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 5OY5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
226 229anti-parallel
Strand 3
A
47 51anti-parallel
Strand 4
A
36 40anti-parallel
Strand 5
A
117 123anti-parallel
Strand 6
A
103 110anti-parallel
Strand 7
A
92 98anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 197first strand
Strand 2
A
178 185anti-parallel
Strand 3
A
166 172anti-parallel
Strand 4
A
276 285anti-parallel
Strand 5
A
265 273anti-parallel
Strand 6
A
215 218anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 374first strand
Strand 2
A
361 366anti-parallel
Strand 3
A
432 437anti-parallel
Strand 4
A
419 424anti-parallel
Strand 5
A
398 400anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il