Analysis of interatomic Contacts of Structural Units in PDB entry:
5OY6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OY6 entry

There are 4 chains in PDB entry 5OY6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 204	ILE 498
B	THR 203	ILE 498
C	VAL 204	ILE 498
D	VAL 204	ASP 499

There are 50 helices in PDB entry 5OY6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	241	254	Right-handed alpha
Helix 2	AA2	A	290	298	Right-handed alpha
Helix 3	AA3	A	301	321	Right-handed alpha
Helix 4	AA4	A	338	340	Right-handed 310
Helix 5	AA5	A	378	382	Right-handed 310
Helix 6	AA6	A	383	388	Right-handed alpha
Helix 7	AA7	A	395	417	Right-handed alpha
Helix 8	AA8	A	440	449	Right-handed alpha
Helix 9	AA9	A	458	463	Right-handed 310
Helix 10	AB1	A	464	476	Right-handed alpha
Helix 11	AB2	A	481	485	Right-handed 310
Helix 12	AB3	A	487	498	Right-handed alpha
Helix 13	AB4	B	203	206	Right-handed 310
Helix 14	AB5	B	241	254	Right-handed alpha
Helix 15	AB6	B	290	298	Right-handed alpha
Helix 16	AB7	B	301	321	Right-handed alpha
Helix 17	AB8	B	338	340	Right-handed 310
Helix 18	AB9	B	378	382	Right-handed 310
Helix 19	AC1	B	383	388	Right-handed alpha
Helix 20	AC2	B	395	417	Right-handed alpha
Helix 21	AC3	B	440	449	Right-handed alpha
Helix 22	AC4	B	458	463	Right-handed 310
Helix 23	AC5	B	464	476	Right-handed alpha
Helix 24	AC6	B	481	485	Right-handed 310
Helix 25	AC7	B	487	498	Right-handed alpha
Helix 26	AC8	C	241	254	Right-handed alpha
Helix 27	AC9	C	290	298	Right-handed alpha
Helix 28	AD1	C	301	321	Right-handed alpha
Helix 29	AD2	C	338	340	Right-handed 310
Helix 30	AD3	C	378	382	Right-handed 310
Helix 31	AD4	C	383	388	Right-handed alpha
Helix 32	AD5	C	395	417	Right-handed alpha
Helix 33	AD6	C	440	449	Right-handed alpha
Helix 34	AD7	C	458	463	Right-handed 310
Helix 35	AD8	C	464	476	Right-handed alpha
Helix 36	AD9	C	481	485	Right-handed 310
Helix 37	AE1	C	487	498	Right-handed alpha
Helix 38	AE2	D	204	208	Right-handed 310
Helix 39	AE3	D	241	254	Right-handed alpha
Helix 40	AE4	D	290	298	Right-handed alpha
Helix 41	AE5	D	301	321	Right-handed alpha
Helix 42	AE6	D	338	340	Right-handed 310
Helix 43	AE7	D	378	382	Right-handed 310
Helix 44	AE8	D	383	388	Right-handed alpha
Helix 45	AE9	D	395	417	Right-handed alpha
Helix 46	AF1	D	440	449	Right-handed alpha
Helix 47	AF2	D	458	463	Right-handed 310
Helix 48	AF3	D	464	476	Right-handed alpha
Helix 49	AF4	D	481	485	Right-handed 310
Helix 50	AF5	D	487	499	Right-handed alpha

There are 12 sheets in PDB entry 5OY6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	216	first strand
Strand 2	A	220	227	anti-parallel
Strand 3	A	230	237	anti-parallel
Strand 4	A	276	284	anti-parallel
Strand 5	A	265	273	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	333	first strand
Strand 2	A	359	361	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	344	first strand
Strand 2	A	350	352	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	217	first strand
Strand 2	B	220	227	anti-parallel
Strand 3	B	230	237	anti-parallel
Strand 4	B	276	283	anti-parallel
Strand 5	B	265	273	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	359	361	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	344	first strand
Strand 2	B	350	352	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	216	first strand
Strand 2	C	220	227	anti-parallel
Strand 3	C	230	237	anti-parallel
Strand 4	C	276	284	anti-parallel
Strand 5	C	265	273	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	333	first strand
Strand 2	C	359	361	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	344	first strand
Strand 2	C	350	352	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	216	first strand
Strand 2	D	220	227	anti-parallel
Strand 3	D	230	237	anti-parallel
Strand 4	D	276	284	anti-parallel
Strand 5	D	265	273	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	331	333	first strand
Strand 2	D	359	361	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	342	344	first strand
Strand 2	D	350	352	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OY6

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OY6