Analysis of interatomic Contacts of Structural Units in PDB entry:
5OY9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OY9 entry

There are 3 chains in PDB entry 5OY9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1HIS 49
A
 ALA 51ILE 410
D
 THR 87PRO 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5OY9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 51Right-handed 310
Helix 2
AA2
A
88 101Right-handed alpha
Helix 3
AA3
A
148 150Right-handed 310
Helix 4
AA4
A
194 198Right-handed 310
Helix 5
AA5
A
241 249Right-handed alpha
Helix 6
AA6
A
268 272Right-handed 310
Helix 7
AA7
A
273 293Right-handed alpha
Helix 8
AA8
A
298 304Right-handed alpha
Helix 9
AA9
A
370 372Right-handed 310
Helix 10
AB1
A
382 387Right-handed alpha
Helix 11
AB2
A
393 397Right-handed 310
Helix 12
AB3
D
104 106Right-handed 310
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There are 9 sheets in PDB entry 5OY9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
322 335anti-parallel
Strand 3
A
311 319anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
322 335anti-parallel
Strand 3
A
344 347anti-parallel
Strand 4
A
353 355anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 214first strand
Strand 2
A
204 207anti-parallel
Strand 3
A
182 190anti-parallel
Strand 4
A
37 45anti-parallel
Strand 5
A
236 239anti-parallel
Strand 6
A
226 230anti-parallel
Strand 7
A
219 223anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 85first strand
Strand 2
A
56 66anti-parallel
Strand 3
A
123 131anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 85first strand
Strand 2
A
56 66anti-parallel
Strand 3
A
165 169anti-parallel
Strand 4
A
157 159anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
143 144anti-parallel
Strand 3
A
152 153anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 297first strand
Strand 2
A
400 401anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 340first strand
Strand 2
A
379 381anti-parallel
Strand 3
A
374 376anti-parallel
Strand 4
A
366 368anti-parallel
Strand 5
A
361 363anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
92 94first strand
Strand 2
D
100 102anti-parallel
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