Analysis of interatomic Contacts of Structural Units in PDB entry:
5OYB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OYB entry

There are 2 chains in PDB entry 5OYB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 117ARG 910
B
 MET 117ARG 910
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 5OYB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
166 174Right-handed alpha
Helix 2
AA2
A
175 182Right-handed alpha
Helix 3
AA3
A
202 204Right-handed 310
Helix 4
AA4
A
205 211Right-handed alpha
Helix 5
AA5
A
242 257Right-handed alpha
Helix 6
AA6
A
268 275Right-handed alpha
Helix 7
AA7
A
296 305Right-handed alpha
Helix 8
AA8
A
316 325Right-handed alpha
Helix 9
AA9
A
325 359Right-handed alpha
Helix 10
AB1
A
360 363Right-handed 310
Helix 11
AB2
A
366 371Right-handed alpha
Helix 12
AB3
A
395 405Right-handed alpha
Helix 13
AB4
A
408 438Right-handed alpha
Helix 14
AB5
A
452 466Right-handed alpha
Helix 15
AB6
A
490 519Right-handed alpha
Helix 16
AB7
A
536 569Right-handed alpha
Helix 17
AB8
A
573 601Right-handed alpha
Helix 18
AB9
A
617 619Right-handed 310
Helix 19
AC1
A
630 644Right-handed alpha
Helix 20
AC2
A
648 667Right-handed alpha
Helix 21
AC3
A
685 692Right-handed alpha
Helix 22
AC4
A
699 715Right-handed alpha
Helix 23
AC5
A
723 744Right-handed alpha
Helix 24
AC6
A
758 782Right-handed alpha
Helix 25
AC7
A
785 795Right-handed alpha
Helix 26
AC8
A
803 809Right-handed alpha
Helix 27
AC9
A
854 885Right-handed alpha
Helix 28
AD1
A
890 909Right-handed alpha
Helix 29
AD2
B
166 174Right-handed alpha
Helix 30
AD3
B
175 182Right-handed alpha
Helix 31
AD4
B
202 204Right-handed 310
Helix 32
AD5
B
205 211Right-handed alpha
Helix 33
AD6
B
242 257Right-handed alpha
Helix 34
AD7
B
268 275Right-handed alpha
Helix 35
AD8
B
296 305Right-handed alpha
Helix 36
AD9
B
316 325Right-handed alpha
Helix 37
AE1
B
325 359Right-handed alpha
Helix 38
AE2
B
360 363Right-handed 310
Helix 39
AE3
B
366 371Right-handed alpha
Helix 40
AE4
B
395 405Right-handed alpha
Helix 41
AE5
B
408 438Right-handed alpha
Helix 42
AE6
B
452 466Right-handed alpha
Helix 43
AE7
B
490 519Right-handed alpha
Helix 44
AE8
B
536 569Right-handed alpha
Helix 45
AE9
B
573 601Right-handed alpha
Helix 46
AF1
B
617 619Right-handed 310
Helix 47
AF2
B
630 644Right-handed alpha
Helix 48
AF3
B
648 667Right-handed alpha
Helix 49
AF4
B
685 692Right-handed alpha
Helix 50
AF5
B
699 715Right-handed alpha
Helix 51
AF6
B
723 744Right-handed alpha
Helix 52
AF7
B
758 782Right-handed alpha
Helix 53
AF8
B
785 795Right-handed alpha
Helix 54
AF9
B
803 809Right-handed alpha
Helix 55
AG1
B
854 885Right-handed alpha
Helix 56
AG2
B
890 909Right-handed alpha
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There are 8 sheets in PDB entry 5OYB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
277 279anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 189first strand
Strand 2
A
196 200anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 218first strand
Strand 2
A
229 230anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
615 616first strand
Strand 2
A
620 621anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 127first strand
Strand 2
B
277 279anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 189first strand
Strand 2
B
196 200anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 218first strand
Strand 2
B
229 230anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
615 616first strand
Strand 2
B
620 621anti-parallel
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