Analysis of interatomic Contacts of Structural Units in PDB entry:
5OYE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OYE entry

There are 2 chains in PDB entry 5OYE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 96ALA 467
B
 LEU 97GLY 466
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5OYE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
116 123Right-handed alpha
Helix 2
AA2
A
149 160Right-handed alpha
Helix 3
AA3
A
170 174Right-handed 310
Helix 4
AA4
A
182 199Right-handed alpha
Helix 5
AA5
A
209 213Right-handed 310
Helix 6
AA6
A
219 221Right-handed 310
Helix 7
AA7
A
222 242Right-handed alpha
Helix 8
AA8
A
260 281Right-handed alpha
Helix 9
AA9
A
282 287Right-handed 310
Helix 10
AB1
A
295 297Right-handed 310
Helix 11
AB2
A
298 306Right-handed alpha
Helix 12
AB3
A
327 332Right-handed alpha
Helix 13
AB4
A
355 359Right-handed 310
Helix 14
AB5
A
364 379Right-handed alpha
Helix 15
AB6
A
380 383Right-handed 310
Helix 16
AB7
A
401 425Right-handed alpha
Helix 17
AB8
A
454 466Right-handed alpha
Helix 18
AB9
B
116 123Right-handed alpha
Helix 19
AC1
B
149 159Right-handed alpha
Helix 20
AC2
B
170 174Right-handed 310
Helix 21
AC3
B
182 199Right-handed alpha
Helix 22
AC4
B
209 213Right-handed 310
Helix 23
AC5
B
219 242Right-handed alpha
Helix 24
AC6
B
260 281Right-handed alpha
Helix 25
AC7
B
282 287Right-handed 310
Helix 26
AC8
B
295 297Right-handed 310
Helix 27
AC9
B
298 306Right-handed alpha
Helix 28
AD1
B
327 332Right-handed alpha
Helix 29
AD2
B
355 359Right-handed 310
Helix 30
AD3
B
364 379Right-handed alpha
Helix 31
AD4
B
400 424Right-handed alpha
Helix 32
AD5
B
454 465Right-handed alpha
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There are 4 sheets in PDB entry 5OYE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
163 166parallel
Strand 3
A
202 206parallel
Strand 4
A
248 251parallel
Strand 5
A
290 293parallel
Strand 6
A
318 324parallel
Strand 7
A
386 391parallel
Strand 8
A
427 431parallel
Strand 9
A
127 129parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 446first strand
Strand 2
A
451 452anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 129first strand
Strand 2
B
163 166parallel
Strand 3
B
202 205parallel
Strand 4
B
248 251parallel
Strand 5
B
290 293parallel
Strand 6
B
318 324parallel
Strand 7
B
386 391parallel
Strand 8
B
427 431parallel
Strand 9
B
127 129parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
445 446first strand
Strand 2
B
451 452anti-parallel
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