Analysis of interatomic Contacts of Structural Units in PDB entry:
5OYH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OYH entry

There are 8 chains in PDB entry 5OYH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 442	ARG 625
B	THR 443	LYS 626
C	THR 443	LYS 626
D	MET 442	LYS 626
E	GLU 444	ARG 625
F	MET 442	LYS 626
G	MET 442	LYS 626
H	MET 442	ALA 445

There are 80 helices in PDB entry 5OYH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	460	468	Right-handed alpha
Helix 2	AA2	A	469	492	Right-handed alpha
Helix 3	AA3	A	515	534	Right-handed alpha
Helix 4	AA4	A	569	581	Right-handed alpha
Helix 5	AA5	A	590	598	Right-handed alpha
Helix 6	AA6	B	460	468	Right-handed alpha
Helix 7	AA7	B	469	492	Right-handed alpha
Helix 8	AA8	B	515	534	Right-handed alpha
Helix 9	AA9	B	569	581	Right-handed alpha
Helix 10	AB1	B	591	598	Right-handed alpha
Helix 11	AB2	C	460	468	Right-handed alpha
Helix 12	AB3	C	469	492	Right-handed alpha
Helix 13	AB4	C	515	534	Right-handed alpha
Helix 14	AB5	C	569	581	Right-handed alpha
Helix 15	AB6	C	590	598	Right-handed alpha
Helix 16	AB7	D	460	468	Right-handed alpha
Helix 17	AB8	D	469	492	Right-handed alpha
Helix 18	AB9	D	515	534	Right-handed alpha
Helix 19	AC1	D	569	581	Right-handed alpha
Helix 20	AC2	D	590	598	Right-handed alpha
Helix 21	AC3	E	460	468	Right-handed alpha
Helix 22	AC4	E	469	492	Right-handed alpha
Helix 23	AC5	E	515	533	Right-handed alpha
Helix 24	AC6	E	569	581	Right-handed alpha
Helix 25	AC7	E	591	598	Right-handed alpha
Helix 26	AC8	F	460	468	Right-handed alpha
Helix 27	AC9	F	469	492	Right-handed alpha
Helix 28	AD1	F	515	534	Right-handed alpha
Helix 29	AD2	F	569	581	Right-handed alpha
Helix 30	AD3	F	590	598	Right-handed alpha
Helix 31	AD4	G	460	468	Right-handed alpha
Helix 32	AD5	G	469	492	Right-handed alpha
Helix 33	AD6	G	515	534	Right-handed alpha
Helix 34	AD7	G	569	581	Right-handed alpha
Helix 35	AD8	G	591	598	Right-handed alpha
Helix 36	AD9	H	460	468	Right-handed alpha
Helix 37	AE1	H	469	492	Right-handed alpha
Helix 38	AE2	H	515	534	Right-handed alpha
Helix 39	AE3	H	569	581	Right-handed alpha
Helix 40	AE4	H	591	598	Right-handed alpha
Helix 41	AE5	I	460	468	Right-handed alpha
Helix 42	AE6	I	469	492	Right-handed alpha
Helix 43	AE7	I	515	534	Right-handed alpha
Helix 44	AE8	I	569	581	Right-handed alpha
Helix 45	AE9	I	590	598	Right-handed alpha
Helix 46	AF1	J	460	468	Right-handed alpha
Helix 47	AF2	J	469	492	Right-handed alpha
Helix 48	AF3	J	515	534	Right-handed alpha
Helix 49	AF4	J	569	581	Right-handed alpha
Helix 50	AF5	J	590	598	Right-handed alpha
Helix 51	AF6	K	460	468	Right-handed alpha
Helix 52	AF7	K	469	492	Right-handed alpha
Helix 53	AF8	K	515	533	Right-handed alpha
Helix 54	AF9	K	569	581	Right-handed alpha
Helix 55	AG1	K	590	598	Right-handed alpha
Helix 56	AG2	L	460	468	Right-handed alpha
Helix 57	AG3	L	469	492	Right-handed alpha
Helix 58	AG4	L	515	534	Right-handed alpha
Helix 59	AG5	L	569	581	Right-handed alpha
Helix 60	AG6	L	590	598	Right-handed alpha
Helix 61	AG7	M	460	468	Right-handed alpha
Helix 62	AG8	M	469	492	Right-handed alpha
Helix 63	AG9	M	515	534	Right-handed alpha
Helix 64	AH1	M	569	581	Right-handed alpha
Helix 65	AH2	M	590	598	Right-handed alpha
Helix 66	AH3	N	460	468	Right-handed alpha
Helix 67	AH4	N	469	492	Right-handed alpha
Helix 68	AH5	N	515	534	Right-handed alpha
Helix 69	AH6	N	569	581	Right-handed alpha
Helix 70	AH7	N	590	598	Right-handed alpha
Helix 71	AH8	O	460	468	Right-handed alpha
Helix 72	AH9	O	469	492	Right-handed alpha
Helix 73	AI1	O	515	534	Right-handed alpha
Helix 74	AI2	O	569	581	Right-handed alpha
Helix 75	AI3	O	591	598	Right-handed alpha
Helix 76	AI4	P	460	468	Right-handed alpha
Helix 77	AI5	P	469	492	Right-handed alpha
Helix 78	AI6	P	515	534	Right-handed alpha
Helix 79	AI7	P	569	581	Right-handed alpha
Helix 80	AI8	P	590	598	Right-handed alpha

There are 44 sheets in PDB entry 5OYH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	499	first strand
Strand 2	A	502	507	anti-parallel
Strand 3	A	443	458	anti-parallel
Strand 4	A	544	558	anti-parallel
Strand 5	A	564	568	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	499	first strand
Strand 2	A	502	507	anti-parallel
Strand 3	A	443	458	anti-parallel
Strand 4	A	544	558	anti-parallel
Strand 5	A	587	589	parallel
Strand 6	A	620	624	anti-parallel
Strand 7	A	602	605	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	609	611	first strand
Strand 2	A	615	617	anti-parallel
Strand 3	E	615	617	anti-parallel
Strand 4	E	609	611	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	494	499	first strand
Strand 2	B	502	507	anti-parallel
Strand 3	B	446	458	anti-parallel
Strand 4	B	544	558	anti-parallel
Strand 5	B	564	568	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	494	499	first strand
Strand 2	B	502	507	anti-parallel
Strand 3	B	446	458	anti-parallel
Strand 4	B	544	558	anti-parallel
Strand 5	B	587	590	parallel
Strand 6	B	619	625	anti-parallel
Strand 7	B	601	605	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	609	611	first strand
Strand 2	B	615	617	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	494	499	first strand
Strand 2	C	502	507	anti-parallel
Strand 3	C	446	458	anti-parallel
Strand 4	C	544	558	anti-parallel
Strand 5	C	564	568	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	494	499	first strand
Strand 2	C	502	507	anti-parallel
Strand 3	C	446	458	anti-parallel
Strand 4	C	544	558	anti-parallel
Strand 5	C	586	589	parallel
Strand 6	C	620	625	anti-parallel
Strand 7	C	601	605	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	609	611	first strand
Strand 2	C	615	617	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	494	499	first strand
Strand 2	D	502	507	anti-parallel
Strand 3	D	443	458	anti-parallel
Strand 4	D	544	558	anti-parallel
Strand 5	D	564	568	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	494	499	first strand
Strand 2	D	502	507	anti-parallel
Strand 3	D	443	458	anti-parallel
Strand 4	D	544	558	anti-parallel
Strand 5	D	587	589	parallel
Strand 6	D	620	625	anti-parallel
Strand 7	D	601	605	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	609	611	first strand
Strand 2	D	615	617	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	494	499	first strand
Strand 2	E	502	507	anti-parallel
Strand 3	E	446	458	anti-parallel
Strand 4	E	544	558	anti-parallel
Strand 5	E	564	568	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	494	499	first strand
Strand 2	E	502	507	anti-parallel
Strand 3	E	446	458	anti-parallel
Strand 4	E	544	558	anti-parallel
Strand 5	E	587	590	parallel
Strand 6	E	619	624	anti-parallel
Strand 7	E	602	605	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	494	499	first strand
Strand 2	F	502	507	anti-parallel
Strand 3	F	443	458	anti-parallel
Strand 4	F	544	558	anti-parallel
Strand 5	F	564	568	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	494	499	first strand
Strand 2	F	502	507	anti-parallel
Strand 3	F	443	458	anti-parallel
Strand 4	F	544	558	anti-parallel
Strand 5	F	587	589	parallel
Strand 6	F	620	625	anti-parallel
Strand 7	F	601	605	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	609	611	first strand
Strand 2	F	615	617	anti-parallel
Strand 3	M	615	617	anti-parallel
Strand 4	M	609	611	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	494	499	first strand
Strand 2	G	502	507	anti-parallel
Strand 3	G	443	458	anti-parallel
Strand 4	G	544	558	anti-parallel
Strand 5	G	564	568	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	494	499	first strand
Strand 2	G	502	507	anti-parallel
Strand 3	G	443	458	anti-parallel
Strand 4	G	544	558	anti-parallel
Strand 5	G	587	590	parallel
Strand 6	G	619	625	anti-parallel
Strand 7	G	601	605	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	609	611	first strand
Strand 2	G	615	617	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	494	499	first strand
Strand 2	H	502	507	anti-parallel
Strand 3	H	443	458	anti-parallel
Strand 4	H	544	558	anti-parallel
Strand 5	H	564	568	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	494	499	first strand
Strand 2	H	502	507	anti-parallel
Strand 3	H	443	458	anti-parallel
Strand 4	H	544	558	anti-parallel
Strand 5	H	587	590	parallel
Strand 6	H	619	625	anti-parallel
Strand 7	H	601	605	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	609	611	first strand
Strand 2	H	615	617	anti-parallel
Strand 3	L	615	617	anti-parallel
Strand 4	L	609	611	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	494	499	first strand
Strand 2	I	502	507	anti-parallel
Strand 3	I	446	458	anti-parallel
Strand 4	I	544	558	anti-parallel
Strand 5	I	564	568	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	494	499	first strand
Strand 2	I	502	507	anti-parallel
Strand 3	I	446	458	anti-parallel
Strand 4	I	544	558	anti-parallel
Strand 5	I	587	589	parallel
Strand 6	I	620	624	anti-parallel
Strand 7	I	602	605	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	609	611	first strand
Strand 2	I	615	617	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	494	499	first strand
Strand 2	J	502	507	anti-parallel
Strand 3	J	443	458	anti-parallel
Strand 4	J	544	558	anti-parallel
Strand 5	J	564	568	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	494	499	first strand
Strand 2	J	502	507	anti-parallel
Strand 3	J	443	458	anti-parallel
Strand 4	J	544	558	anti-parallel
Strand 5	J	586	589	parallel
Strand 6	J	620	625	anti-parallel
Strand 7	J	601	605	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	609	611	first strand
Strand 2	J	615	617	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	494	499	first strand
Strand 2	K	502	507	anti-parallel
Strand 3	K	446	458	anti-parallel
Strand 4	K	544	558	anti-parallel
Strand 5	K	564	568	anti-parallel

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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	494	499	first strand
Strand 2	K	502	507	anti-parallel
Strand 3	K	446	458	anti-parallel
Strand 4	K	544	558	anti-parallel
Strand 5	K	587	589	parallel
Strand 6	K	620	624	anti-parallel
Strand 7	K	602	605	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	609	611	first strand
Strand 2	K	615	617	anti-parallel
Strand 3	P	615	617	anti-parallel
Strand 4	P	609	611	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	494	499	first strand
Strand 2	L	502	507	anti-parallel
Strand 3	L	443	458	anti-parallel
Strand 4	L	544	558	anti-parallel
Strand 5	L	564	568	anti-parallel

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There are 7 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	494	499	first strand
Strand 2	L	502	507	anti-parallel
Strand 3	L	443	458	anti-parallel
Strand 4	L	544	558	anti-parallel
Strand 5	L	587	589	parallel
Strand 6	L	620	625	anti-parallel
Strand 7	L	601	605	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	494	499	first strand
Strand 2	M	502	507	anti-parallel
Strand 3	M	446	458	anti-parallel
Strand 4	M	544	557	anti-parallel
Strand 5	M	565	568	anti-parallel

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There are 7 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	494	499	first strand
Strand 2	M	502	507	anti-parallel
Strand 3	M	446	458	anti-parallel
Strand 4	M	544	557	anti-parallel
Strand 5	M	587	589	parallel
Strand 6	M	620	625	anti-parallel
Strand 7	M	601	605	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	494	499	first strand
Strand 2	N	502	507	anti-parallel
Strand 3	N	443	458	anti-parallel
Strand 4	N	544	557	anti-parallel
Strand 5	N	565	568	anti-parallel

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There are 7 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	494	499	first strand
Strand 2	N	502	507	anti-parallel
Strand 3	N	443	458	anti-parallel
Strand 4	N	544	557	anti-parallel
Strand 5	N	587	589	parallel
Strand 6	N	620	625	anti-parallel
Strand 7	N	601	605	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	609	611	first strand
Strand 2	N	615	617	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	494	499	first strand
Strand 2	O	502	507	anti-parallel
Strand 3	O	446	458	anti-parallel
Strand 4	O	544	557	anti-parallel
Strand 5	O	565	568	anti-parallel

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There are 7 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	494	499	first strand
Strand 2	O	502	507	anti-parallel
Strand 3	O	446	458	anti-parallel
Strand 4	O	544	557	anti-parallel
Strand 5	O	587	590	parallel
Strand 6	O	619	625	anti-parallel
Strand 7	O	601	605	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	609	611	first strand
Strand 2	O	615	617	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	494	499	first strand
Strand 2	P	502	507	anti-parallel
Strand 3	P	446	458	anti-parallel
Strand 4	P	544	556	anti-parallel
Strand 5	P	566	568	anti-parallel

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There are 7 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	494	499	first strand
Strand 2	P	502	507	anti-parallel
Strand 3	P	446	458	anti-parallel
Strand 4	P	544	556	anti-parallel
Strand 5	P	586	589	parallel
Strand 6	P	620	625	anti-parallel
Strand 7	P	601	605	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OYH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OYH