Analysis of interatomic Contacts of Structural Units in PDB entry:
5OYJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OYJ entry

There are 4 chains in PDB entry 5OYJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 9	ASN 169
B	ASP 13	ASN 169
C	ALA 322	HIS 552
D	ALA 322	HIS 553

There are 23 helices in PDB entry 5OYJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	24	Right-handed alpha
Helix 2	AA2	A	26	36	Right-handed alpha
Helix 3	AA3	A	49	57	Right-handed alpha
Helix 4	AA4	A	59	69	Right-handed alpha
Helix 5	AA5	A	82	91	Right-handed alpha
Helix 6	AA6	A	92	102	Right-handed alpha
Helix 7	AA7	A	115	124	Right-handed alpha
Helix 8	AA8	A	125	135	Right-handed alpha
Helix 9	AA9	A	148	156	Right-handed alpha
Helix 10	AB1	A	158	165	Right-handed alpha
Helix 11	AB2	B	14	24	Right-handed alpha
Helix 12	AB3	B	26	36	Right-handed alpha
Helix 13	AB4	B	49	57	Right-handed alpha
Helix 14	AB5	B	59	69	Right-handed alpha
Helix 15	AB6	B	82	90	Right-handed alpha
Helix 16	AB7	B	92	102	Right-handed alpha
Helix 17	AB8	B	115	124	Right-handed alpha
Helix 18	AB9	B	125	135	Right-handed alpha
Helix 19	AC1	B	148	156	Right-handed alpha
Helix 20	AC2	B	158	169	Right-handed alpha
Helix 21	AC3	C	389	393	Right-handed 310
Helix 22	AC4	C	464	466	Right-handed 310
Helix 23	AC5	D	389	393	Right-handed 310

There are 10 sheets in PDB entry 5OYJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	332	first strand
Strand 2	C	354	357	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	343	first strand
Strand 2	C	408	423	parallel
Strand 3	C	441	450	anti-parallel
Strand 4	C	510	519	anti-parallel
Strand 5	C	497	499	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	369	370	first strand
Strand 2	C	361	366	anti-parallel
Strand 3	C	394	401	anti-parallel
Strand 4	C	408	423	anti-parallel
Strand 5	C	441	450	anti-parallel
Strand 6	C	510	519	anti-parallel
Strand 7	C	503	507	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	351	first strand
Strand 2	C	382	385	anti-parallel
Strand 3	C	377	379	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	434	436	first strand
Strand 2	C	537	548	parallel
Strand 3	C	526	534	anti-parallel
Strand 4	C	455	462	anti-parallel
Strand 5	C	486	487	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	329	332	first strand
Strand 2	D	354	357	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	343	first strand
Strand 2	D	408	423	parallel
Strand 3	D	441	450	anti-parallel
Strand 4	D	511	519	anti-parallel
Strand 5	D	497	499	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	369	370	first strand
Strand 2	D	361	366	anti-parallel
Strand 3	D	394	401	anti-parallel
Strand 4	D	408	423	anti-parallel
Strand 5	D	441	450	anti-parallel
Strand 6	D	511	519	anti-parallel
Strand 7	D	503	506	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	351	first strand
Strand 2	D	382	385	anti-parallel
Strand 3	D	377	379	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	434	436	first strand
Strand 2	D	537	548	parallel
Strand 3	D	526	534	anti-parallel
Strand 4	D	455	461	anti-parallel
Strand 5	D	486	487	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OYJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OYJ