Analysis of interatomic Contacts of Structural Units in PDB entry:
5OYK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OYK entry

There is 1 chain in PDB entry 5OYK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2TRP 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There is 1 helix in PDB entry 5OYK. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
89 95Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5OYK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 18 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
51 53anti-parallel
Strand 3
A
73 76anti-parallel
Strand 4
A
81 88anti-parallel
Strand 5
A
117 126anti-parallel
Strand 6
A
132 138anti-parallel
Strand 7
A
147 157anti-parallel
Strand 8
A
160 180anti-parallel
Strand 9
A
185 205anti-parallel
Strand 10
A
208 219anti-parallel
Strand 11
A
228 239anti-parallel
Strand 12
A
247 258anti-parallel
Strand 13
A
263 273anti-parallel
Strand 14
A
281 294anti-parallel
Strand 15
A
309 324anti-parallel
Strand 16
A
11 23anti-parallel
Strand 17
A
37 42anti-parallel
Strand 18
A
56 58anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 299first strand
Strand 2
A
304 306anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il