Analysis of interatomic Contacts of Structural Units in PDB entry:
5OYM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OYM entry

There are 8 chains in PDB entry 5OYM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLU 345	VAL 429
G	MET 344	GLU 431
A	GLU 345	VAL 429
B	MET 344	PHE 427
C	GLU 345	VAL 429
D	MET 344	GLY 430
E	GLU 345	GLY 430
F	MET 344	GLY 430

There are 42 helices in PDB entry 5OYM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	346	362	Right-handed alpha
Helix 2	AA2	H	369	383	Right-handed alpha
Helix 3	AA3	H	386	392	Right-handed alpha
Helix 4	AA4	H	393	404	Right-handed alpha
Helix 5	AA5	H	409	426	Right-handed alpha
Helix 6	AA6	G	346	363	Right-handed alpha
Helix 7	AA7	G	364	368	Right-handed 310
Helix 8	AA8	G	369	383	Right-handed alpha
Helix 9	AA9	G	386	391	Right-handed alpha
Helix 10	AB1	G	393	404	Right-handed alpha
Helix 11	AB2	G	409	430	Right-handed alpha
Helix 12	AB3	A	346	362	Right-handed alpha
Helix 13	AB4	A	369	383	Right-handed alpha
Helix 14	AB5	A	386	392	Right-handed alpha
Helix 15	AB6	A	393	406	Right-handed alpha
Helix 16	AB7	A	409	426	Right-handed alpha
Helix 17	AB8	B	346	362	Right-handed alpha
Helix 18	AB9	B	369	382	Right-handed alpha
Helix 19	AC1	B	386	391	Right-handed alpha
Helix 20	AC2	B	393	404	Right-handed alpha
Helix 21	AC3	B	409	425	Right-handed alpha
Helix 22	AC4	C	346	363	Right-handed alpha
Helix 23	AC5	C	369	383	Right-handed alpha
Helix 24	AC6	C	386	391	Right-handed alpha
Helix 25	AC7	C	393	406	Right-handed alpha
Helix 26	AC8	C	409	426	Right-handed alpha
Helix 27	AC9	D	346	363	Right-handed alpha
Helix 28	AD1	D	369	383	Right-handed alpha
Helix 29	AD2	D	386	391	Right-handed alpha
Helix 30	AD3	D	393	404	Right-handed alpha
Helix 31	AD4	D	409	425	Right-handed alpha
Helix 32	AD5	D	426	429	Right-handed 310
Helix 33	AD6	E	346	362	Right-handed alpha
Helix 34	AD7	E	369	383	Right-handed alpha
Helix 35	AD8	E	386	392	Right-handed alpha
Helix 36	AD9	E	393	404	Right-handed alpha
Helix 37	AE1	E	409	427	Right-handed alpha
Helix 38	AE2	F	346	362	Right-handed alpha
Helix 39	AE3	F	369	383	Right-handed alpha
Helix 40	AE4	F	386	391	Right-handed alpha
Helix 41	AE5	F	393	406	Right-handed alpha
Helix 42	AE6	F	409	430	Right-handed alpha

There are 5 sheets in PDB entry 5OYM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	363	364	first strand
Strand 2	H	367	368	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	A	367	368	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	364	first strand
Strand 2	B	367	368	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	363	364	first strand
Strand 2	E	367	368	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	363	364	first strand
Strand 2	F	367	368	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OYM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OYM