Analysis of interatomic Contacts of Structural Units in PDB entry:
5OYN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5OYN entry

There are 8 chains in PDB entry 5OYN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 3	ASP 129
A	THR 131	HIS 591
B	ASN 3	ASP 129
B	THR 131	HIS 591
C	ARG 4	ASP 129
C	THR 131	HIS 591
D	ARG 4	ASP 129
D	THR 131	HIS 591

There are118 helices in PDB entry 5OYN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	16	Right-handed alpha
Helix 2	AA2	A	20	31	Right-handed alpha
Helix 3	AA3	A	37	43	Right-handed alpha
Helix 4	AA4	A	63	79	Right-handed alpha
Helix 5	AA5	A	98	100	Right-handed 310
Helix 6	AA6	A	101	117	Right-handed alpha
Helix 7	AA7	A	130	143	Right-handed alpha
Helix 8	AA8	A	167	179	Right-handed alpha
Helix 9	AA9	A	183	194	Right-handed alpha
Helix 10	AB1	A	205	217	Right-handed alpha
Helix 11	AB2	A	231	251	Right-handed alpha
Helix 12	AB3	A	254	259	Right-handed alpha
Helix 13	AB4	A	260	274	Right-handed alpha
Helix 14	AB5	A	279	291	Right-handed alpha
Helix 15	AB6	A	296	304	Right-handed alpha
Helix 16	AB7	A	319	327	Right-handed alpha
Helix 17	AB8	A	327	339	Right-handed alpha
Helix 18	AB9	A	353	359	Right-handed alpha
Helix 19	AC1	A	397	400	Right-handed 310
Helix 20	AC2	A	401	409	Right-handed alpha
Helix 21	AC3	A	427	435	Right-handed alpha
Helix 22	AC4	A	437	441	Right-handed 310
Helix 23	AC5	A	470	476	Right-handed alpha
Helix 24	AC6	A	504	508	Right-handed 310
Helix 25	AC7	A	509	513	Right-handed 310
Helix 26	AC8	A	534	543	Right-handed alpha
Helix 27	AC9	A	554	564	Right-handed alpha
Helix 28	AD1	A	566	570	Right-handed 310
Helix 29	AD2	A	573	578	Right-handed alpha
Helix 30	AD3	A	581	585	Right-handed 310
Helix 31	AD4	B	11	16	Right-handed alpha
Helix 32	AD5	B	20	31	Right-handed alpha
Helix 33	AD6	B	37	43	Right-handed alpha
Helix 34	AD7	B	63	79	Right-handed alpha
Helix 35	AD8	B	98	100	Right-handed 310
Helix 36	AD9	B	101	117	Right-handed alpha
Helix 37	AE1	B	130	143	Right-handed alpha
Helix 38	AE2	B	167	179	Right-handed alpha
Helix 39	AE3	B	184	194	Right-handed alpha
Helix 40	AE4	B	205	217	Right-handed alpha
Helix 41	AE5	B	231	251	Right-handed alpha
Helix 42	AE6	B	254	259	Right-handed alpha
Helix 43	AE7	B	260	275	Right-handed alpha
Helix 44	AE8	B	279	291	Right-handed alpha
Helix 45	AE9	B	296	302	Right-handed alpha
Helix 46	AF1	B	319	326	Right-handed alpha
Helix 47	AF2	B	327	339	Right-handed alpha
Helix 48	AF3	B	353	359	Right-handed alpha
Helix 49	AF4	B	397	400	Right-handed 310
Helix 50	AF5	B	401	409	Right-handed alpha
Helix 51	AF6	B	427	435	Right-handed alpha
Helix 52	AF7	B	437	441	Right-handed 310
Helix 53	AF8	B	470	475	Right-handed alpha
Helix 54	AF9	B	504	508	Right-handed 310
Helix 55	AG1	B	509	513	Right-handed 310
Helix 56	AG2	B	534	542	Right-handed alpha
Helix 57	AG3	B	554	564	Right-handed alpha
Helix 58	AG4	B	575	579	Right-handed 310
Helix 59	AG5	B	581	585	Right-handed 310
Helix 60	AG6	C	11	16	Right-handed alpha
Helix 61	AG7	C	20	30	Right-handed alpha
Helix 62	AG8	C	31	33	Right-handed 310
Helix 63	AG9	C	37	43	Right-handed alpha
Helix 64	AH1	C	63	78	Right-handed alpha
Helix 65	AH2	C	98	100	Right-handed 310
Helix 66	AH3	C	101	117	Right-handed alpha
Helix 67	AH4	C	130	143	Right-handed alpha
Helix 68	AH5	C	167	179	Right-handed alpha
Helix 69	AH6	C	183	194	Right-handed alpha
Helix 70	AH7	C	205	217	Right-handed alpha
Helix 71	AH8	C	231	252	Right-handed alpha
Helix 72	AH9	C	254	259	Right-handed alpha
Helix 73	AI1	C	260	275	Right-handed alpha
Helix 74	AI2	C	279	291	Right-handed alpha
Helix 75	AI3	C	296	302	Right-handed alpha
Helix 76	AI4	C	319	326	Right-handed alpha
Helix 77	AI5	C	327	339	Right-handed alpha
Helix 78	AI6	C	353	359	Right-handed alpha
Helix 79	AI7	C	397	400	Right-handed 310
Helix 80	AI8	C	401	410	Right-handed alpha
Helix 81	AI9	C	427	435	Right-handed alpha
Helix 82	AJ1	C	437	441	Right-handed 310
Helix 83	AJ2	C	470	476	Right-handed alpha
Helix 84	AJ3	C	504	508	Right-handed 310
Helix 85	AJ4	C	509	513	Right-handed 310
Helix 86	AJ5	C	534	543	Right-handed alpha
Helix 87	AJ6	C	554	564	Right-handed alpha
Helix 88	AJ7	C	566	570	Right-handed 310
Helix 89	AJ8	C	573	577	Right-handed 310
Helix 90	AJ9	C	581	585	Right-handed 310
Helix 91	AK1	D	11	16	Right-handed alpha
Helix 92	AK2	D	20	31	Right-handed alpha
Helix 93	AK3	D	37	43	Right-handed alpha
Helix 94	AK4	D	63	79	Right-handed alpha
Helix 95	AK5	D	99	117	Right-handed alpha
Helix 96	AK6	D	130	143	Right-handed alpha
Helix 97	AK7	D	167	179	Right-handed alpha
Helix 98	AK8	D	183	194	Right-handed alpha
Helix 99	AK9	D	205	218	Right-handed alpha
Helix 100	AL1	D	231	252	Right-handed alpha
Helix 101	AL2	D	254	259	Right-handed alpha
Helix 102	AL3	D	260	274	Right-handed alpha
Helix 103	AL4	D	279	291	Right-handed alpha
Helix 104	AL5	D	296	302	Right-handed alpha
Helix 105	AL6	D	319	326	Right-handed alpha
Helix 106	AL7	D	327	339	Right-handed alpha
Helix 107	AL8	D	353	359	Right-handed alpha
Helix 108	AL9	D	397	400	Right-handed 310
Helix 109	AM1	D	401	408	Right-handed alpha
Helix 110	AM2	D	427	435	Right-handed alpha
Helix 111	AM3	D	437	441	Right-handed 310
Helix 112	AM4	D	470	475	Right-handed alpha
Helix 113	AM5	D	509	513	Right-handed 310
Helix 114	AM6	D	534	543	Right-handed alpha
Helix 115	AM7	D	554	564	Right-handed alpha
Helix 116	AM8	D	566	570	Right-handed 310
Helix 117	AM9	D	573	579	Right-handed 310
Helix 118	AN1	D	581	585	Right-handed 310

There are 15 sheets in PDB entry 5OYN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	86	first strand
Strand 2	A	47	52	parallel
Strand 3	A	121	126	parallel
Strand 4	A	146	150	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	159	first strand
Strand 2	A	162	163	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	384	first strand
Strand 2	A	392	395	anti-parallel
Strand 3	A	498	502	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	485	first strand
Strand 2	A	446	451	parallel
Strand 3	A	417	426	parallel
Strand 4	A	519	523	anti-parallel
Strand 5	A	528	531	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	86	first strand
Strand 2	B	47	52	parallel
Strand 3	B	121	126	parallel
Strand 4	B	146	150	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	383	384	first strand
Strand 2	B	392	395	anti-parallel
Strand 3	B	498	502	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	483	485	first strand
Strand 2	B	446	451	parallel
Strand 3	B	417	426	parallel
Strand 4	B	519	523	anti-parallel
Strand 5	B	528	531	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	86	first strand
Strand 2	C	47	52	parallel
Strand 3	C	121	126	parallel
Strand 4	C	146	150	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	163	164	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	383	384	first strand
Strand 2	C	392	395	anti-parallel
Strand 3	C	498	502	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	483	485	first strand
Strand 2	C	446	451	parallel
Strand 3	C	417	426	parallel
Strand 4	C	519	523	anti-parallel
Strand 5	C	528	532	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	86	first strand
Strand 2	D	47	52	parallel
Strand 3	D	121	126	parallel
Strand 4	D	146	150	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	158	first strand
Strand 2	D	163	164	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	383	385	first strand
Strand 2	D	392	395	anti-parallel
Strand 3	D	498	502	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	483	485	first strand
Strand 2	D	446	451	parallel
Strand 3	D	417	426	parallel
Strand 4	D	519	523	anti-parallel
Strand 5	D	528	531	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5OYN

Analysis of interatomic Contacts of Structural Units in PDB entry:
5OYN