Analysis of interatomic Contacts of Structural Units in PDB entry:
5OYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OYP entry

There are 4 chains in PDB entry 5OYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 243
B
 GLU 1THR 239
C
 ASP 1PRO 273
D
 ASP 1VAL 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5OYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 8Right-handed 310
Helix 2
AA2
A
32 37Right-handed alpha
Helix 3
AA3
A
64 68Right-handed 310
Helix 4
AA4
A
79 83Right-handed 310
Helix 5
AA5
A
85 92Right-handed alpha
Helix 6
AA6
A
132 136Right-handed 310
Helix 7
AA7
A
187 192Right-handed alpha
Helix 8
AA8
A
193 195Right-handed 310
Helix 9
AA9
A
234 238Right-handed 310
Helix 10
AB1
B
42 47Right-handed alpha
Helix 11
AB2
B
54 59Right-handed alpha
Helix 12
AB3
B
86 91Right-handed alpha
Helix 13
AB4
B
96 98Right-handed 310
Helix 14
AB5
B
99 104Right-handed alpha
Helix 15
AB6
B
145 152Right-handed alpha
Helix 16
AB7
C
53 58Right-handed alpha
Helix 17
AB8
C
100 107Right-handed alpha
Helix 18
AB9
C
146 152Right-handed alpha
Helix 19
AC1
C
196 202Right-handed alpha
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There are 11 sheets in PDB entry 5OYP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 49first strand
Strand 2
A
207 224anti-parallel
Strand 3
A
94 107anti-parallel
Strand 4
A
175 176anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 49first strand
Strand 2
A
207 224anti-parallel
Strand 3
A
94 107anti-parallel
Strand 4
A
161 165anti-parallel
Strand 5
C
29 30parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
197 202anti-parallel
Strand 3
A
115 121anti-parallel
Strand 4
A
151 154anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 98first strand
Strand 2
A
229 232anti-parallel
Strand 3
C
255 256anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 19first strand
Strand 2
B
22 26anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 32first strand
Strand 2
B
164 169parallel
Strand 3
B
105 119anti-parallel
Strand 4
B
215 232anti-parallel
Strand 5
B
67 70anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 63first strand
Strand 2
B
215 232anti-parallel
Strand 3
B
105 119anti-parallel
Strand 4
B
178 179anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 85first strand
Strand 2
B
194 207anti-parallel
Strand 3
B
125 134anti-parallel
Strand 4
B
154 158anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 69first strand
Strand 2
C
232 240anti-parallel
Strand 3
C
116 123anti-parallel
Strand 4
C
165 170anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 83first strand
Strand 2
C
213 220anti-parallel
Strand 3
C
131 137anti-parallel
Strand 4
C
154 159anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
179 180first strand
Strand 2
C
109 113anti-parallel
Strand 3
C
245 249anti-parallel
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