Analysis of interatomic Contacts of Structural Units in PDB entry:
5P8W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5P8W entry

There are 3 chains in PDB entry 5P8W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2SER 216
B
 ASP 3PRO 215
C
 ASP 3SER 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 5P8W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 17Right-handed alpha
Helix 2
AA2
A
21 37Right-handed alpha
Helix 3
AA3
A
43 58Right-handed alpha
Helix 4
AA4
A
70 78Right-handed alpha
Helix 5
AA5
A
92 107Right-handed alpha
Helix 6
AA6
A
108 110Right-handed 310
Helix 7
AA7
A
118 123Right-handed alpha
Helix 8
AA8
A
125 131Right-handed alpha
Helix 9
AA9
A
143 145Right-handed 310
Helix 10
AB1
A
146 157Right-handed alpha
Helix 11
AB2
A
176 186Right-handed alpha
Helix 12
AB3
B
4 17Right-handed alpha
Helix 13
AB4
B
21 36Right-handed alpha
Helix 14
AB5
B
43 58Right-handed alpha
Helix 15
AB6
B
70 78Right-handed alpha
Helix 16
AB7
B
92 107Right-handed alpha
Helix 17
AB8
B
108 110Right-handed 310
Helix 18
AB9
B
118 123Right-handed alpha
Helix 19
AC1
B
125 131Right-handed alpha
Helix 20
AC2
B
143 145Right-handed 310
Helix 21
AC3
B
146 157Right-handed alpha
Helix 22
AC4
B
176 186Right-handed alpha
Helix 23
AC5
C
4 15Right-handed alpha
Helix 24
AC6
C
21 36Right-handed alpha
Helix 25
AC7
C
41 58Right-handed alpha
Helix 26
AC8
C
70 78Right-handed alpha
Helix 27
AC9
C
92 107Right-handed alpha
Helix 28
AD1
C
108 110Right-handed 310
Helix 29
AD2
C
118 123Right-handed alpha
Helix 30
AD3
C
125 131Right-handed alpha
Helix 31
AD4
C
143 145Right-handed 310
Helix 32
AD5
C
146 157Right-handed alpha
Helix 33
AD6
C
176 186Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5P8W. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 116first strand
Strand 2
A
85 90parallel
Strand 3
A
61 65parallel
Strand 4
A
135 140parallel
Strand 5
A
160 168parallel
Strand 6
B
189 212anti-parallel
Strand 7
A
189 212anti-parallel
Strand 8
B
160 168anti-parallel
Strand 9
B
135 140parallel
Strand 10
B
61 65parallel
Strand 11
B
85 90parallel
Strand 12
B
112 116parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
112 116first strand
Strand 2
C
85 90parallel
Strand 3
C
61 65parallel
Strand 4
C
135 140parallel
Strand 5
C
160 169parallel
Strand 6
C
205 212anti-parallel
Strand 7
C
189 196anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il