Analysis of interatomic Contacts of Structural Units in PDB entry:
5PAB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5PAB entry

There are 3 chains in PDB entry 5PAB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 ILE 1LEU 145
H
 VAL 147PRO 254
L
 LEU 89LYS 143
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5PAB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
39 44Right-handed 310
Helix 2
AA2
H
48 50Right-handed 310
Helix 3
AA3
H
113 120Right-handed alpha
Helix 4
AA4
H
121 124Right-handed 310
Helix 5
AA5
H
154 162Right-handed alpha
Helix 6
AA6
H
231 240Right-handed alpha
Helix 7
AA7
L
93 98Right-handed 310
Helix 8
AA8
L
138 143Right-handed alpha
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There are 4 sheets in PDB entry 5PAB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
5 6first strand
Strand 2
H
146 153anti-parallel
Strand 3
H
175 178anti-parallel
Strand 4
H
223 227anti-parallel
Strand 5
H
203 210anti-parallel
Strand 6
H
195 200anti-parallel
Strand 7
H
126 131anti-parallel
Strand 8
H
146 153anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
248 251first strand
Strand 2
H
69 79parallel
Strand 3
H
92 96anti-parallel
Strand 4
H
35 38anti-parallel
Strand 5
H
23 32anti-parallel
Strand 6
H
15 20anti-parallel
Strand 7
H
52 56anti-parallel
Strand 8
H
69 79anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
101 105first strand
Strand 2
L
109 113anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
118 120first strand
Strand 2
L
127 129anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il