Analysis of interatomic Contacts of Structural Units in PDB entry:
5PAD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5PAD entry

There are 2 chains in PDB entry 5PAD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ILE 1ASN 212
I
GLY 2GLY 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 5PAD. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
H1
A
24 43Right-handed alpha
Helix 2
H2
A
50 58Right-handed alpha
Helix 3
H3
A
67 78Right-handed alpha
Helix 4
H4
A
117 128Right-handed alpha
Helix 5
H5
A
137 143Right-handed alpha
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There are 2 sheets in PDB entry 5PAD. Click on sheet of interest to get list of strands forming it: S1A, S1B,

There are 7 strands in S1A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
111 112first strand
Strand 2
A
206 208anti-parallel
Strand 3
A
130 131anti-parallel
Strand 4
A
162 167anti-parallel
Strand 5
A
169 175anti-parallel
Strand 6
A
185 191anti-parallel
Strand 7
A
183 183anti-parallel
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There are 5 strands in S1B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
5 7first strand
Strand 2
A
162 167anti-parallel
Strand 3
A
169 175anti-parallel
Strand 4
A
185 191anti-parallel
Strand 5
A
149 149parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il