Analysis of interatomic Contacts of Structural Units in PDB entry:
5PGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5PGM entry

There are 8 chains in PDB entry 5PGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 PRO 1ALA 235
C
 PRO 1ALA 235
A
 PRO 1ALA 234
B
 PRO 1ALA 235
E
 PRO 1ALA 234
F
 PRO 1ALA 235
G
 PRO 1ALA 234
H
 PRO 1ALA 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 93 helices in PDB entry 5PGM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
D
12 15Right-handed alpha
Helix 2
2
D
29 44Right-handed alpha
Helix 3
3
D
58 71Right-handed alpha
Helix 4
4
D
82 84Right-handed 310
Helix 5
5
D
90 92Right-handed 310
Helix 6
6
D
97 104Right-handed alpha
Helix 7
7
D
106 114Right-handed alpha
Helix 8
8
D
135 137Right-handed 310
Helix 9
9
D
151 164Right-handed alpha
Helix 10
10
D
166 171Right-handed alpha
Helix 11
11
D
182 193Right-handed alpha
Helix 12
12
D
200 202Right-handed 310
Helix 13
13
D
230 233Right-handed alpha
Helix 14
14
C
12 15Right-handed alpha
Helix 15
15
C
29 45Right-handed alpha
Helix 16
16
C
58 71Right-handed alpha
Helix 17
17
C
82 84Right-handed 310
Helix 18
18
C
90 92Right-handed 310
Helix 19
19
C
97 104Right-handed alpha
Helix 20
20
C
106 114Right-handed alpha
Helix 21
21
C
135 137Right-handed 310
Helix 22
22
C
151 172Right-handed alpha
Helix 23
23
C
182 193Right-handed alpha
Helix 24
24
C
230 233Right-handed alpha
Helix 25
25
A
12 16Right-handed alpha
Helix 26
26
A
29 44Right-handed alpha
Helix 27
27
A
58 71Right-handed alpha
Helix 28
28
A
82 84Right-handed 310
Helix 29
29
A
90 92Right-handed 310
Helix 30
30
A
97 114Right-handed alpha
Helix 31
31
A
135 137Right-handed 310
Helix 32
32
A
142 144Right-handed 310
Helix 33
33
A
151 171Right-handed alpha
Helix 34
34
A
182 193Right-handed alpha
Helix 35
35
A
199 202Right-handed 310
Helix 36
36
B
12 15Right-handed alpha
Helix 37
37
B
29 44Right-handed alpha
Helix 38
38
B
58 71Right-handed alpha
Helix 39
39
B
82 84Right-handed 310
Helix 40
40
B
90 92Right-handed 310
Helix 41
41
B
97 114Right-handed alpha
Helix 42
42
B
135 137Right-handed 310
Helix 43
43
B
142 144Right-handed 310
Helix 44
44
B
151 171Right-handed alpha
Helix 45
45
B
182 193Right-handed alpha
Helix 46
46
B
199 201Right-handed 310
Helix 47
47
B
230 233Right-handed alpha
Helix 48
48
E
12 15Right-handed alpha
Helix 49
49
E
29 44Right-handed alpha
Helix 50
50
E
58 71Right-handed alpha
Helix 51
51
E
82 84Right-handed 310
Helix 52
52
E
90 92Right-handed 310
Helix 53
53
E
97 104Right-handed alpha
Helix 54
54
E
106 114Right-handed alpha
Helix 55
55
E
135 137Right-handed 310
Helix 56
56
E
151 164Right-handed alpha
Helix 57
57
E
166 171Right-handed alpha
Helix 58
58
E
182 193Right-handed alpha
Helix 59
59
E
200 202Right-handed 310
Helix 60
60
F
12 15Right-handed alpha
Helix 61
61
F
29 45Right-handed alpha
Helix 62
62
F
58 71Right-handed alpha
Helix 63
63
F
82 84Right-handed 310
Helix 64
64
F
90 92Right-handed 310
Helix 65
65
F
97 104Right-handed alpha
Helix 66
66
F
106 114Right-handed alpha
Helix 67
67
F
135 137Right-handed 310
Helix 68
68
F
151 171Right-handed alpha
Helix 69
69
F
182 193Right-handed alpha
Helix 70
70
F
230 233Right-handed alpha
Helix 71
71
G
12 16Right-handed alpha
Helix 72
72
G
29 44Right-handed alpha
Helix 73
73
G
58 71Right-handed alpha
Helix 74
74
G
82 84Right-handed 310
Helix 75
75
G
90 92Right-handed 310
Helix 76
76
G
97 114Right-handed alpha
Helix 77
77
G
135 137Right-handed 310
Helix 78
78
G
142 144Right-handed 310
Helix 79
79
G
151 171Right-handed alpha
Helix 80
80
G
182 193Right-handed alpha
Helix 81
81
G
199 202Right-handed 310
Helix 82
82
H
12 15Right-handed alpha
Helix 83
83
H
29 44Right-handed alpha
Helix 84
84
H
58 71Right-handed alpha
Helix 85
85
H
82 84Right-handed 310
Helix 86
86
H
90 92Right-handed 310
Helix 87
87
H
97 114Right-handed alpha
Helix 88
88
H
135 137Right-handed 310
Helix 89
89
H
142 144Right-handed 310
Helix 90
90
H
151 171Right-handed alpha
Helix 91
91
H
182 193Right-handed alpha
Helix 92
92
H
199 201Right-handed 310
Helix 93
93
H
230 233Right-handed alpha
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There are 8 sheets in PDB entry 5PGM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
211 214first strand
Strand 2
D
2 7anti-parallel
Strand 3
D
176 180parallel
Strand 4
D
51 54parallel
Strand 5
D
77 80parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
211 214first strand
Strand 2
C
2 7anti-parallel
Strand 3
C
176 180parallel
Strand 4
C
51 54parallel
Strand 5
C
77 80parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 214first strand
Strand 2
A
2 7anti-parallel
Strand 3
A
176 180parallel
Strand 4
A
51 54parallel
Strand 5
A
77 80parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 214first strand
Strand 2
B
2 7anti-parallel
Strand 3
B
176 180parallel
Strand 4
B
51 54parallel
Strand 5
B
77 80parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
211 214first strand
Strand 2
E
2 7anti-parallel
Strand 3
E
176 180parallel
Strand 4
E
51 54parallel
Strand 5
E
77 80parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
211 214first strand
Strand 2
F
2 7anti-parallel
Strand 3
F
176 180parallel
Strand 4
F
51 54parallel
Strand 5
F
77 80parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
211 214first strand
Strand 2
G
2 7anti-parallel
Strand 3
G
176 180parallel
Strand 4
G
51 54parallel
Strand 5
G
77 80parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
211 214first strand
Strand 2
H
2 7anti-parallel
Strand 3
H
176 180parallel
Strand 4
H
51 54parallel
Strand 5
H
77 80parallel
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