Analysis of interatomic Contacts of Structural Units in PDB entry:
5PGW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5PGW entry

There are 4 chains in PDB entry 5PGW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 26TYR 284
B
 ALA 11MET 286
D
 ALA 11TYR 284
E
 GLU 25TYR 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 5PGW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 33Right-handed 310
Helix 2
AA2
A
44 57Right-handed alpha
Helix 3
AA3
A
67 80Right-handed alpha
Helix 4
AA4
A
95 111Right-handed alpha
Helix 5
AA5
A
132 144Right-handed alpha
Helix 6
AA6
A
144 162Right-handed alpha
Helix 7
AA7
A
170 174Right-handed 310
Helix 8
AA8
A
180 204Right-handed alpha
Helix 9
AA9
A
220 228Right-handed alpha
Helix 10
AB1
A
237 251Right-handed alpha
Helix 11
AB2
A
261 269Right-handed alpha
Helix 12
AB3
A
270 280Right-handed alpha
Helix 13
AB4
A
281 283Right-handed 310
Helix 14
AB5
B
28 33Right-handed 310
Helix 15
AB6
B
44 57Right-handed alpha
Helix 16
AB7
B
67 81Right-handed alpha
Helix 17
AB8
B
95 111Right-handed alpha
Helix 18
AB9
B
132 144Right-handed alpha
Helix 19
AC1
B
144 162Right-handed alpha
Helix 20
AC2
B
170 174Right-handed 310
Helix 21
AC3
B
180 204Right-handed alpha
Helix 22
AC4
B
220 228Right-handed alpha
Helix 23
AC5
B
237 251Right-handed alpha
Helix 24
AC6
B
261 269Right-handed alpha
Helix 25
AC7
B
270 279Right-handed alpha
Helix 26
AC8
D
28 33Right-handed 310
Helix 27
AC9
D
44 58Right-handed alpha
Helix 28
AD1
D
67 81Right-handed alpha
Helix 29
AD2
D
95 111Right-handed alpha
Helix 30
AD3
D
132 144Right-handed alpha
Helix 31
AD4
D
144 162Right-handed alpha
Helix 32
AD5
D
170 174Right-handed 310
Helix 33
AD6
D
180 204Right-handed alpha
Helix 34
AD7
D
220 228Right-handed alpha
Helix 35
AD8
D
237 251Right-handed alpha
Helix 36
AD9
D
261 269Right-handed alpha
Helix 37
AE1
D
270 281Right-handed alpha
Helix 38
AE2
E
28 33Right-handed 310
Helix 39
AE3
E
44 57Right-handed alpha
Helix 40
AE4
E
67 82Right-handed alpha
Helix 41
AE5
E
95 111Right-handed alpha
Helix 42
AE6
E
132 144Right-handed alpha
Helix 43
AE7
E
144 162Right-handed alpha
Helix 44
AE8
E
170 174Right-handed 310
Helix 45
AE9
E
180 204Right-handed alpha
Helix 46
AF1
E
220 228Right-handed alpha
Helix 47
AF2
E
237 251Right-handed alpha
Helix 48
AF3
E
261 269Right-handed alpha
Helix 49
AF4
E
270 281Right-handed alpha
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There are 4 sheets in PDB entry 5PGW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 88first strand
Strand 2
A
60 63parallel
Strand 3
A
36 39parallel
Strand 4
A
115 118parallel
Strand 5
A
164 168parallel
Strand 6
A
209 215parallel
Strand 7
A
255 258parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 88first strand
Strand 2
B
60 63parallel
Strand 3
B
36 39parallel
Strand 4
B
115 118parallel
Strand 5
B
164 168parallel
Strand 6
B
209 215parallel
Strand 7
B
255 258parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
85 88first strand
Strand 2
D
60 63parallel
Strand 3
D
36 39parallel
Strand 4
D
115 118parallel
Strand 5
D
164 168parallel
Strand 6
D
209 215parallel
Strand 7
D
255 258parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
85 88first strand
Strand 2
E
60 63parallel
Strand 3
E
36 39parallel
Strand 4
E
115 118parallel
Strand 5
E
164 168parallel
Strand 6
E
209 215parallel
Strand 7
E
255 258parallel
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