Analysis of interatomic Contacts of Structural Units in PDB entry:
5PGZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5PGZ entry

There are 2 chains in PDB entry 5PGZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 25PHE 289
B
 GLU 25PHE 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5PGZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 33Right-handed 310
Helix 2
AA2
A
44 57Right-handed alpha
Helix 3
AA3
A
67 82Right-handed alpha
Helix 4
AA4
A
95 111Right-handed alpha
Helix 5
AA5
A
132 143Right-handed alpha
Helix 6
AA6
A
144 162Right-handed alpha
Helix 7
AA7
A
172 174Right-handed 310
Helix 8
AA8
A
180 204Right-handed alpha
Helix 9
AA9
A
220 228Right-handed alpha
Helix 10
AB1
A
237 251Right-handed alpha
Helix 11
AB2
A
263 269Right-handed alpha
Helix 12
AB3
A
270 281Right-handed alpha
Helix 13
AB4
A
282 284Right-handed 310
Helix 14
AB5
A
285 289Right-handed 310
Helix 15
AB6
B
28 33Right-handed 310
Helix 16
AB7
B
44 57Right-handed alpha
Helix 17
AB8
B
67 82Right-handed alpha
Helix 18
AB9
B
95 111Right-handed alpha
Helix 19
AC1
B
132 144Right-handed alpha
Helix 20
AC2
B
144 162Right-handed alpha
Helix 21
AC3
B
172 174Right-handed 310
Helix 22
AC4
B
180 204Right-handed alpha
Helix 23
AC5
B
220 228Right-handed alpha
Helix 24
AC6
B
237 251Right-handed alpha
Helix 25
AC7
B
263 269Right-handed alpha
Helix 26
AC8
B
270 281Right-handed alpha
Helix 27
AC9
B
282 284Right-handed 310
Helix 28
AD1
B
285 289Right-handed 310
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There are 2 sheets in PDB entry 5PGZ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 90first strand
Strand 2
A
60 65parallel
Strand 3
A
36 39parallel
Strand 4
A
115 118parallel
Strand 5
A
164 170parallel
Strand 6
A
209 215parallel
Strand 7
A
255 258parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 90first strand
Strand 2
B
60 65parallel
Strand 3
B
36 39parallel
Strand 4
B
115 118parallel
Strand 5
B
164 170parallel
Strand 6
B
209 215parallel
Strand 7
B
255 258parallel
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